miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 195562 0.68 0.628283
Target:  5'- aGCc-GCCCCgagCCGCCCCGAC--CGAc -3'
miRNA:   3'- cCGucUGGGGa--GGCGGGGCUGcaGCU- -5'
11125 3' -62.1 NC_002794.1 + 194480 0.72 0.420409
Target:  5'- aGCGGcuccuccagccGCCCCUCCGCgCCCGGCccgCGGc -3'
miRNA:   3'- cCGUC-----------UGGGGAGGCG-GGGCUGca-GCU- -5'
11125 3' -62.1 NC_002794.1 + 193942 0.68 0.599737
Target:  5'- cGGCuccGGCCCCgccgccaccgCCGCCaCCGcCGUCa- -3'
miRNA:   3'- -CCGu--CUGGGGa---------GGCGG-GGCuGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 193868 0.67 0.685262
Target:  5'- ----cACCCCUCCccggGCCCCG-CGUCGc -3'
miRNA:   3'- ccgucUGGGGAGG----CGGGGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 192385 0.67 0.704025
Target:  5'- gGGCuGACCgCCaccgCCGCgCCGGgguaGUCGAa -3'
miRNA:   3'- -CCGuCUGG-GGa---GGCGgGGCUg---CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 192349 0.7 0.524918
Target:  5'- cGCGGACCucggCCUCCGCCgCCGcCGacCGAg -3'
miRNA:   3'- cCGUCUGG----GGAGGCGG-GGCuGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 191756 0.68 0.637811
Target:  5'- cGGaCAGAgcCCCCUCggaauCGUCCgCGACGcUCGAa -3'
miRNA:   3'- -CC-GUCU--GGGGAG-----GCGGG-GCUGC-AGCU- -5'
11125 3' -62.1 NC_002794.1 + 191702 0.67 0.682433
Target:  5'- cGCGGACCaCCUCCucgucguccgagcgGCCCacgGACG-CGAc -3'
miRNA:   3'- cCGUCUGG-GGAGG--------------CGGGg--CUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 190735 0.66 0.767648
Target:  5'- cGCAGcGCCCgCcgCCGUCUCGACGggggCGGc -3'
miRNA:   3'- cCGUC-UGGG-Ga-GGCGGGGCUGCa---GCU- -5'
11125 3' -62.1 NC_002794.1 + 187586 0.68 0.647336
Target:  5'- cGGCGcGGCCgCCgUCGCgacgCCCGGCGUCGc -3'
miRNA:   3'- -CCGU-CUGG-GGaGGCG----GGGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 186351 0.66 0.713331
Target:  5'- cGGCGacGugCCCgaccagccgCCGCCgCCGcCGUCGu -3'
miRNA:   3'- -CCGU--CugGGGa--------GGCGG-GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 185487 0.66 0.756143
Target:  5'- cGGCgaggGGACCgccuauauauucgaUCUCCGCgUCGGCGUCa- -3'
miRNA:   3'- -CCG----UCUGG--------------GGAGGCGgGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 185408 0.71 0.445399
Target:  5'- cGCGGGCCCgaCCGCCgUCGAC-UCGAc -3'
miRNA:   3'- cCGUCUGGGgaGGCGG-GGCUGcAGCU- -5'
11125 3' -62.1 NC_002794.1 + 184482 0.71 0.471198
Target:  5'- cGGCgcgcgGGGCCCCggaCGCCCgGGCGgcgCGGg -3'
miRNA:   3'- -CCG-----UCUGGGGag-GCGGGgCUGCa--GCU- -5'
11125 3' -62.1 NC_002794.1 + 183931 0.66 0.758813
Target:  5'- cGGCAGGgUCa-CCGCCaCGAaCGUCGAc -3'
miRNA:   3'- -CCGUCUgGGgaGGCGGgGCU-GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 183619 0.67 0.685262
Target:  5'- cGGCcGGCgCCC-CCGCgccCCCGAC-UCGAg -3'
miRNA:   3'- -CCGuCUG-GGGaGGCG---GGGCUGcAGCU- -5'
11125 3' -62.1 NC_002794.1 + 183007 0.67 0.694666
Target:  5'- cGCGGgcGCCCCgcgcgcgcccgCCGCCCCgGACGaaGAa -3'
miRNA:   3'- cCGUC--UGGGGa----------GGCGGGG-CUGCagCU- -5'
11125 3' -62.1 NC_002794.1 + 181487 0.67 0.67582
Target:  5'- aGGCAGACgagCC-CCGCgagCCCGACGcUCGu -3'
miRNA:   3'- -CCGUCUGg--GGaGGCG---GGGCUGC-AGCu -5'
11125 3' -62.1 NC_002794.1 + 181157 0.66 0.713331
Target:  5'- -cCAG-CCCgUCCGCCgcgCCGACGgCGAa -3'
miRNA:   3'- ccGUCuGGGgAGGCGG---GGCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 178201 0.71 0.479965
Target:  5'- cGGCuGACugCCCUCgguaGCCUCGGCGUaCGAa -3'
miRNA:   3'- -CCGuCUG--GGGAGg---CGGGGCUGCA-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.