miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 152185 0.66 0.748983
Target:  5'- uGCAGcuACCUgaacacggucgcgUUCCGCCCggaGGCGUCGGa -3'
miRNA:   3'- cCGUC--UGGG-------------GAGGCGGGg--CUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 151933 0.66 0.731755
Target:  5'- cGGCGcaagcGCUCCgCCGCCCgCGACGaCGGc -3'
miRNA:   3'- -CCGUc----UGGGGaGGCGGG-GCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 146955 0.68 0.622566
Target:  5'- uGGCucucucuucauGGACCgCCUgucgcgaggucggcgCCGCCggCCGACGUCGGc -3'
miRNA:   3'- -CCG-----------UCUGG-GGA---------------GGCGG--GGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 146561 0.67 0.704025
Target:  5'- cGGCGGGCCCgaguuccgagUCCGCCgCGGacucgacgaagcUGUCGAg -3'
miRNA:   3'- -CCGUCUGGGg---------AGGCGGgGCU------------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 145282 0.66 0.74086
Target:  5'- uGGCAGGCCugaCCU-CGaCCCCGcUGUCGu -3'
miRNA:   3'- -CCGUCUGG---GGAgGC-GGGGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 142067 0.66 0.74086
Target:  5'- uGCGGGCUCCUCgGUCaaaCCGugGcCGGa -3'
miRNA:   3'- cCGUCUGGGGAGgCGG---GGCugCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 141155 0.66 0.767648
Target:  5'- cGGCGGAUCCCg-CGa--CGACGUCGu -3'
miRNA:   3'- -CCGUCUGGGGagGCgggGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 138546 0.67 0.685262
Target:  5'- cGGCGGcuuuuCgCCUCCGCCcgcuCCGuCGUCGc -3'
miRNA:   3'- -CCGUCu----GgGGAGGCGG----GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 138447 0.69 0.580801
Target:  5'- cGGCGG-CgCCUCgGCCUgCGACGUgGAc -3'
miRNA:   3'- -CCGUCuGgGGAGgCGGG-GCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 137499 0.66 0.767648
Target:  5'- cGGUcGGuuCCUCCGCCggcguuUCGACGUgGAu -3'
miRNA:   3'- -CCGuCUggGGAGGCGG------GGCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 137071 0.67 0.694666
Target:  5'- cGGCGGGCUCUUCgCGCgCC-AUGUCGc -3'
miRNA:   3'- -CCGUCUGGGGAG-GCGgGGcUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 136714 0.66 0.767648
Target:  5'- uGCAGGCgCCg--GUCCCGGCGUCc- -3'
miRNA:   3'- cCGUCUGgGGaggCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 134112 0.69 0.580801
Target:  5'- -aCGGAcCCCCUCCGUCCgaCGGCGcggCGAg -3'
miRNA:   3'- ccGUCU-GGGGAGGCGGG--GCUGCa--GCU- -5'
11125 3' -62.1 NC_002794.1 + 133500 0.66 0.722577
Target:  5'- cGGC-GACCCgUCCGacggcgaCCUGGcCGUUGAg -3'
miRNA:   3'- -CCGuCUGGGgAGGCg------GGGCU-GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 130644 0.67 0.67582
Target:  5'- cGGCccGCCCg-CCGCCCCGcCGcCGGc -3'
miRNA:   3'- -CCGucUGGGgaGGCGGGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 128823 0.66 0.722577
Target:  5'- cGGCucGGACUCUgucugaUCCugaGCgCCGGCGUCGAc -3'
miRNA:   3'- -CCG--UCUGGGG------AGG---CGgGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 128000 0.66 0.767648
Target:  5'- gGGCGGACgaCCgucgucggCCGCCCCGuCGgcuGAc -3'
miRNA:   3'- -CCGUCUGg-GGa-------GGCGGGGCuGCag-CU- -5'
11125 3' -62.1 NC_002794.1 + 126438 0.67 0.65685
Target:  5'- aGGUguGGGCgCCUCgGCCCUGGguccggcuCGUCGGg -3'
miRNA:   3'- -CCG--UCUGgGGAGgCGGGGCU--------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 123390 0.66 0.713331
Target:  5'- uGCAcACCCUgCUGCUCCG-CGUCGGc -3'
miRNA:   3'- cCGUcUGGGGaGGCGGGGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 119661 0.69 0.571377
Target:  5'- aGCGuGACCucgaCCUCCGgcguCCCCGGCGUCu- -3'
miRNA:   3'- cCGU-CUGG----GGAGGC----GGGGCUGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.