miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 119531 0.72 0.412269
Target:  5'- cGCGGACCCCU-CGUCCgCGGcCGUCGc -3'
miRNA:   3'- cCGUCUGGGGAgGCGGG-GCU-GCAGCu -5'
11125 3' -62.1 NC_002794.1 + 119362 0.7 0.534107
Target:  5'- uGCGGACCUCcUCGUUCgCGugGUCGAg -3'
miRNA:   3'- cCGUCUGGGGaGGCGGG-GCugCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 118668 0.69 0.580801
Target:  5'- gGGCGcGACgCCCgcggCCGCCgCCGGCGgcagCGc -3'
miRNA:   3'- -CCGU-CUG-GGGa---GGCGG-GGCUGCa---GCu -5'
11125 3' -62.1 NC_002794.1 + 118250 0.66 0.758813
Target:  5'- cGGCGGGCUggaggucggCCggggcggCgGCgCCGGCGUCGGg -3'
miRNA:   3'- -CCGUCUGG---------GGa------GgCGgGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 116896 0.66 0.758813
Target:  5'- cGGCGccGuCUCCggcggCCGgUCCGGCGUCGGc -3'
miRNA:   3'- -CCGU--CuGGGGa----GGCgGGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 115811 0.68 0.606387
Target:  5'- cGGCAGaaGCUCUUCCGCcuggaucggcggggCCCGGCGggcUCGGg -3'
miRNA:   3'- -CCGUC--UGGGGAGGCG--------------GGGCUGC---AGCU- -5'
11125 3' -62.1 NC_002794.1 + 113559 0.66 0.758813
Target:  5'- aGGCgccGGACCgUCUgCGUCUCGGCGUCc- -3'
miRNA:   3'- -CCG---UCUGG-GGAgGCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 112296 0.68 0.599737
Target:  5'- gGGCGGcCCCCcgggUCCGaCUUCGGCGcCGAc -3'
miRNA:   3'- -CCGUCuGGGG----AGGC-GGGGCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 111993 0.67 0.698415
Target:  5'- cGGCAcGCCCugcgcggucaccaguCggcgCCGCCCgaaGGCGUCGAg -3'
miRNA:   3'- -CCGUcUGGG---------------Ga---GGCGGGg--CUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 108802 0.67 0.690909
Target:  5'- cGGCGGAUCUacgaggugcaaCGCUUCGGCGUCGGc -3'
miRNA:   3'- -CCGUCUGGGgag--------GCGGGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 107263 0.72 0.396286
Target:  5'- cGGCGGAgccgcgccguCCgCCgccgUCGCCCCGuCGUCGAc -3'
miRNA:   3'- -CCGUCU----------GG-GGa---GGCGGGGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 106456 0.7 0.534107
Target:  5'- aGGCGGACCUCgUCGCCgUGAC-UCGGc -3'
miRNA:   3'- -CCGUCUGGGGaGGCGGgGCUGcAGCU- -5'
11125 3' -62.1 NC_002794.1 + 105427 0.68 0.637811
Target:  5'- aGGguGGCCgCCgCCGCgCCGGCGgCGc -3'
miRNA:   3'- -CCguCUGG-GGaGGCGgGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 103838 0.68 0.632094
Target:  5'- cGCAGGCCUUgaccaccgagcgggCCGCCgCCGACGagagCGAc -3'
miRNA:   3'- cCGUCUGGGGa-------------GGCGG-GGCUGCa---GCU- -5'
11125 3' -62.1 NC_002794.1 + 101660 0.66 0.713331
Target:  5'- cGGCGGuuaGCCCgUCCGaaaCgCCGGCGgagcgCGAg -3'
miRNA:   3'- -CCGUC---UGGGgAGGCg--G-GGCUGCa----GCU- -5'
11125 3' -62.1 NC_002794.1 + 90479 0.67 0.67582
Target:  5'- cGGCGGGgCCg-CCGUCCCGcGCGaUCGGc -3'
miRNA:   3'- -CCGUCUgGGgaGGCGGGGC-UGC-AGCU- -5'
11125 3' -62.1 NC_002794.1 + 89717 0.66 0.74086
Target:  5'- cGCGGugCCgaUCCGCg-CGGCGUCGGu -3'
miRNA:   3'- cCGUCugGGg-AGGCGggGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 84588 0.7 0.497734
Target:  5'- -cCAGACCCCgaccCCGaCCCCGACccCGAc -3'
miRNA:   3'- ccGUCUGGGGa---GGC-GGGGCUGcaGCU- -5'
11125 3' -62.1 NC_002794.1 + 82146 0.68 0.599737
Target:  5'- gGGCGGACaCCCggCCcgacgGCUCCGGCGccCGAg -3'
miRNA:   3'- -CCGUCUG-GGGa-GG-----CGGGGCUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 82091 0.66 0.749881
Target:  5'- gGGCAccccGACCUCgucugCCGCCCCcgcagccuccucGGCGUgGGc -3'
miRNA:   3'- -CCGU----CUGGGGa----GGCGGGG------------CUGCAgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.