miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 136714 0.66 0.767648
Target:  5'- uGCAGGCgCCg--GUCCCGGCGUCc- -3'
miRNA:   3'- cCGUCUGgGGaggCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 128000 0.66 0.767648
Target:  5'- gGGCGGACgaCCgucgucggCCGCCCCGuCGgcuGAc -3'
miRNA:   3'- -CCGUCUGg-GGa-------GGCGGGGCuGCag-CU- -5'
11125 3' -62.1 NC_002794.1 + 190735 0.66 0.767648
Target:  5'- cGCAGcGCCCgCcgCCGUCUCGACGggggCGGc -3'
miRNA:   3'- cCGUC-UGGG-Ga-GGCGGGGCUGCa---GCU- -5'
11125 3' -62.1 NC_002794.1 + 137499 0.66 0.767648
Target:  5'- cGGUcGGuuCCUCCGCCggcguuUCGACGUgGAu -3'
miRNA:   3'- -CCGuCUggGGAGGCGG------GGCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 68957 0.66 0.767648
Target:  5'- cGGCGccucuccCUCCUCCGCgggccgcgaCgCCGGCGUCGAc -3'
miRNA:   3'- -CCGUcu-----GGGGAGGCG---------G-GGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 35457 0.66 0.749881
Target:  5'- cGGCuGAUCgCCagCUGCCUcuaccuguucuuCGACGUCGAg -3'
miRNA:   3'- -CCGuCUGG-GGa-GGCGGG------------GCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 152185 0.66 0.748983
Target:  5'- uGCAGcuACCUgaacacggucgcgUUCCGCCCggaGGCGUCGGa -3'
miRNA:   3'- cCGUC--UGGG-------------GAGGCGGGg--CUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 26090 0.66 0.722577
Target:  5'- gGGCAG-CgCCgaCgGCCCCGGCGaUCGc -3'
miRNA:   3'- -CCGUCuG-GGgaGgCGGGGCUGC-AGCu -5'
11125 3' -62.1 NC_002794.1 + 151933 0.66 0.731755
Target:  5'- cGGCGcaagcGCUCCgCCGCCCgCGACGaCGGc -3'
miRNA:   3'- -CCGUc----UGGGGaGGCGGG-GCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 133500 0.66 0.722577
Target:  5'- cGGC-GACCCgUCCGacggcgaCCUGGcCGUUGAg -3'
miRNA:   3'- -CCGuCUGGGgAGGCg------GGGCU-GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 76107 0.66 0.731755
Target:  5'- cGCGGAUcacuccgacccgCCCUcugaCCGCCCCGcaGCuGUCGAc -3'
miRNA:   3'- cCGUCUG------------GGGA----GGCGGGGC--UG-CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 60761 0.66 0.74086
Target:  5'- ---cGACCUCUgagcgCCGCCgCCGcCGUCGAa -3'
miRNA:   3'- ccguCUGGGGA-----GGCGG-GGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 142067 0.66 0.74086
Target:  5'- uGCGGGCUCCUCgGUCaaaCCGugGcCGGa -3'
miRNA:   3'- cCGUCUGGGGAGgCGG---GGCugCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 145282 0.66 0.74086
Target:  5'- uGGCAGGCCugaCCU-CGaCCCCGcUGUCGu -3'
miRNA:   3'- -CCGUCUGG---GGAgGC-GGGGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 8215 0.66 0.74086
Target:  5'- uGCGGGCCCCgUCCcCCUCGuccuCGUCc- -3'
miRNA:   3'- cCGUCUGGGG-AGGcGGGGCu---GCAGcu -5'
11125 3' -62.1 NC_002794.1 + 62509 0.66 0.74086
Target:  5'- cGGCGccgccGGCgCCUCCGCCCaccguGACGaaGAg -3'
miRNA:   3'- -CCGU-----CUGgGGAGGCGGGg----CUGCagCU- -5'
11125 3' -62.1 NC_002794.1 + 53880 0.66 0.74086
Target:  5'- cGGCGGACUCCUCgucggGaCUCCGGCGgCGu -3'
miRNA:   3'- -CCGUCUGGGGAGg----C-GGGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 89717 0.66 0.74086
Target:  5'- cGCGGugCCgaUCCGCg-CGGCGUCGGu -3'
miRNA:   3'- cCGUCugGGg-AGGCGggGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 82091 0.66 0.749881
Target:  5'- gGGCAccccGACCUCgucugCCGCCCCcgcagccuccucGGCGUgGGc -3'
miRNA:   3'- -CCGU----CUGGGGa----GGCGGGG------------CUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 53096 0.66 0.749881
Target:  5'- gGGCcaacaGGACCCCggCgGUUCCGgagcucGCGUCGAc -3'
miRNA:   3'- -CCG-----UCUGGGGa-GgCGGGGC------UGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.