miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11126 3' -56.9 NC_002794.1 + 148010 0.66 0.944865
Target:  5'- cCGcGUCGGccUCGGUCGGUUGaUCGgGGa -3'
miRNA:   3'- -GC-CAGCC--AGCCAGCCAGCcAGUgUUg -5'
11126 3' -56.9 NC_002794.1 + 59195 0.66 0.935888
Target:  5'- uGG-CGGUCGacgcgcacGUCGGcgucUCGGcCGCGGCg -3'
miRNA:   3'- gCCaGCCAGC--------CAGCC----AGCCaGUGUUG- -5'
11126 3' -56.9 NC_002794.1 + 143295 0.66 0.935888
Target:  5'- gGGUCGGgCGGgugcagcgCGGcgggauggaagUCGGUCGCGu- -3'
miRNA:   3'- gCCAGCCaGCCa-------GCC-----------AGCCAGUGUug -5'
11126 3' -56.9 NC_002794.1 + 133998 0.66 0.931071
Target:  5'- aGGUCGGUCgccgGGUgcgagcgcugcaCGGUCgGGUCuACGAg -3'
miRNA:   3'- gCCAGCCAG----CCA------------GCCAG-CCAG-UGUUg -5'
11126 3' -56.9 NC_002794.1 + 143013 0.66 0.931071
Target:  5'- cCGGUCaGcGUgCGGUCGGcCGGgu-CGACg -3'
miRNA:   3'- -GCCAG-C-CA-GCCAGCCaGCCaguGUUG- -5'
11126 3' -56.9 NC_002794.1 + 141804 0.66 0.926033
Target:  5'- gGGUCGGccUCGGacagcCGGUUGGaCgACGACg -3'
miRNA:   3'- gCCAGCC--AGCCa----GCCAGCCaG-UGUUG- -5'
11126 3' -56.9 NC_002794.1 + 61168 0.66 0.926033
Target:  5'- gCGGUcCGGaUCGG-CGGcUGGUCGCucguGCu -3'
miRNA:   3'- -GCCA-GCC-AGCCaGCCaGCCAGUGu---UG- -5'
11126 3' -56.9 NC_002794.1 + 118261 0.66 0.926033
Target:  5'- aGGUCGGcCGGggCGG-CGG-CGcCGGCg -3'
miRNA:   3'- gCCAGCCaGCCa-GCCaGCCaGU-GUUG- -5'
11126 3' -56.9 NC_002794.1 + 133375 0.66 0.926033
Target:  5'- -cGUCGGUCGucGUcCGG-CGGUCAUGAUc -3'
miRNA:   3'- gcCAGCCAGC--CA-GCCaGCCAGUGUUG- -5'
11126 3' -56.9 NC_002794.1 + 179108 0.66 0.926033
Target:  5'- cCGGUcguccgCGGUcCGGgcgcgCGGUCGGUCGa--- -3'
miRNA:   3'- -GCCA------GCCA-GCCa----GCCAGCCAGUguug -5'
11126 3' -56.9 NC_002794.1 + 132910 0.66 0.920775
Target:  5'- gCGG-CGGcCGGUcacucguuccCGGUUGGaCGCGACu -3'
miRNA:   3'- -GCCaGCCaGCCA----------GCCAGCCaGUGUUG- -5'
11126 3' -56.9 NC_002794.1 + 138771 0.66 0.920775
Target:  5'- gCGG-CGGUCGGUggaGGggaggGGUCACGcACa -3'
miRNA:   3'- -GCCaGCCAGCCAg--CCag---CCAGUGU-UG- -5'
11126 3' -56.9 NC_002794.1 + 29211 0.66 0.920775
Target:  5'- cCGG-CGGUCGG-CGGccgUCGGcCGCcgAGCa -3'
miRNA:   3'- -GCCaGCCAGCCaGCC---AGCCaGUG--UUG- -5'
11126 3' -56.9 NC_002794.1 + 89838 0.67 0.911903
Target:  5'- aCGaGUCGGUCGGccggccgucccuuucUCGGUUGG-CuuGGCg -3'
miRNA:   3'- -GC-CAGCCAGCC---------------AGCCAGCCaGugUUG- -5'
11126 3' -56.9 NC_002794.1 + 137609 0.67 0.909598
Target:  5'- cCGG-CGGUCGcGgCGG-CGGUgccCACGACg -3'
miRNA:   3'- -GCCaGCCAGC-CaGCCaGCCA---GUGUUG- -5'
11126 3' -56.9 NC_002794.1 + 140674 0.67 0.89755
Target:  5'- gGGUCGGgcgcaGGUCGGUgcgacggacCGGcCGCcGCg -3'
miRNA:   3'- gCCAGCCag---CCAGCCA---------GCCaGUGuUG- -5'
11126 3' -56.9 NC_002794.1 + 105773 0.68 0.876513
Target:  5'- gGGUCGGUgGGccgcgucgauaGGUCGGUCucggaGACg -3'
miRNA:   3'- gCCAGCCAgCCag---------CCAGCCAGug---UUG- -5'
11126 3' -56.9 NC_002794.1 + 83846 0.68 0.875129
Target:  5'- uCGGUCGccgaUCGGgaagccgucguccCGGUCGG-CGCGACg -3'
miRNA:   3'- -GCCAGCc---AGCCa------------GCCAGCCaGUGUUG- -5'
11126 3' -56.9 NC_002794.1 + 22738 0.68 0.848871
Target:  5'- aCGGUCGGUCaGUCaGUCaGUCAg--- -3'
miRNA:   3'- -GCCAGCCAGcCAGcCAGcCAGUguug -5'
11126 3' -56.9 NC_002794.1 + 188156 0.68 0.848871
Target:  5'- aGGUCGGcCgGGUCGGacaGGUCGgAAUc -3'
miRNA:   3'- gCCAGCCaG-CCAGCCag-CCAGUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.