miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11126	5'	-52.2	NC_002794.1	+	159267	0.66	0.992563
	Target:  5'- aGAUcGACguugUGACUGACUcGACCGa -3' miRNA:   3'- aCUGaCUGacugACUGACUGA-CUGGC- -5'
11126	5'	-52.2	NC_002794.1	+	143477	0.67	0.984103
	Target:  5'- cGGCUGGCaGAC-GAUgucGCUGGCCGc -3' miRNA:   3'- aCUGACUGaCUGaCUGac-UGACUGGC- -5'
11126	5'	-52.2	NC_002794.1	+	135204	0.69	0.956197
	Target:  5'- cGugUGugUGugUGugUGugUGugUn -3' miRNA:   3'- aCugACugACugACugACugACugGc -5'
11126	5'	-52.2	NC_002794.1	+	123000	0.7	0.934024
	Target:  5'- gGGCcGuGCUGACgGGCcGGCUGGCCGu -3' miRNA:   3'- aCUGaC-UGACUGaCUGaCUGACUGGC- -5'
11126	5'	-52.2	NC_002794.1	+	126268	0.74	0.778598
	Target:  5'- cGGCUGGCUGGCggcgcugGGCUuGCUGugCGc -3' miRNA:   3'- aCUGACUGACUGa------CUGAcUGACugGC- -5'
11126	5'	-52.2	NC_002794.1	+	135229	0.74	0.769163
	Target:  5'- gUGugUGugUGugUGugUGugUGugUGg -3' miRNA:   3'- -ACugACugACugACugACugACugGC- -5'
11126	5'	-52.2	NC_002794.1	+	84876	0.81	0.404851
	Target:  5'- gUGACUGACUGACgucgGGCUGugUG-CCu -3' miRNA:   3'- -ACUGACUGACUGa---CUGACugACuGGc -5'
11126	5'	-52.2	NC_002794.1	+	189633	0.88	0.181131
	Target:  5'- cGACUGGCUaGCUGGCUGGCUGACUa -3' miRNA:   3'- aCUGACUGAcUGACUGACUGACUGGc -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home