miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11127 3' -58.2 NC_002794.1 + 78418 0.66 0.878445
Target:  5'- ---aCUCUCCGC-UCCCgGCG-UCaCGg -3'
miRNA:   3'- aagaGAGAGGCGaAGGGgCGCuAG-GC- -5'
11127 3' -58.2 NC_002794.1 + 12318 0.66 0.878445
Target:  5'- -aCUC-CUCCGCggUCCgCGUGA-CCGu -3'
miRNA:   3'- aaGAGaGAGGCGa-AGGgGCGCUaGGC- -5'
11127 3' -58.2 NC_002794.1 + 61777 0.66 0.864181
Target:  5'- cUCUCgccucccgaccgUCUCCGCccucccgUCCCCGCucaucUCCGg -3'
miRNA:   3'- aAGAG------------AGAGGCGa------AGGGGCGcu---AGGC- -5'
11127 3' -58.2 NC_002794.1 + 193635 0.66 0.856749
Target:  5'- uUUUUUUUUUCGUUUCCCCGguCGGcUCCGg -3'
miRNA:   3'- -AAGAGAGAGGCGAAGGGGC--GCU-AGGC- -5'
11127 3' -58.2 NC_002794.1 + 718 0.66 0.856749
Target:  5'- ---cCUCUCCGCgaCCCCGgGGgcUCUGu -3'
miRNA:   3'- aagaGAGAGGCGaaGGGGCgCU--AGGC- -5'
11127 3' -58.2 NC_002794.1 + 7511 0.66 0.849126
Target:  5'- -cCUCUCcuucuucuUCCGCUuuUCCCUGCGuggCCc -3'
miRNA:   3'- aaGAGAG--------AGGCGA--AGGGGCGCua-GGc -5'
11127 3' -58.2 NC_002794.1 + 43779 0.67 0.841317
Target:  5'- aUCUCg--CCGaacgCCCCGCG-UCCGa -3'
miRNA:   3'- aAGAGagaGGCgaa-GGGGCGCuAGGC- -5'
11127 3' -58.2 NC_002794.1 + 185994 0.67 0.833328
Target:  5'- gUCUC-CUCCGCcgggCUCCGcCGcUCCGg -3'
miRNA:   3'- aAGAGaGAGGCGaa--GGGGC-GCuAGGC- -5'
11127 3' -58.2 NC_002794.1 + 85975 0.67 0.833328
Target:  5'- cUCUCaUCggaccgCCGCggCCCCGcCGAcgguUCCGa -3'
miRNA:   3'- aAGAG-AGa-----GGCGaaGGGGC-GCU----AGGC- -5'
11127 3' -58.2 NC_002794.1 + 65883 0.67 0.816838
Target:  5'- -gCUCUCUCCGCUcCUUCGuCGcgUCGa -3'
miRNA:   3'- aaGAGAGAGGCGAaGGGGC-GCuaGGC- -5'
11127 3' -58.2 NC_002794.1 + 148257 0.67 0.816838
Target:  5'- uUUCUCUCUCCGCaggCUCUG-GAUCa- -3'
miRNA:   3'- -AAGAGAGAGGCGaa-GGGGCgCUAGgc -5'
11127 3' -58.2 NC_002794.1 + 181867 0.68 0.763813
Target:  5'- aUCacgCUCCGCUgCCCCGgGGUCgCGa -3'
miRNA:   3'- aAGagaGAGGCGAaGGGGCgCUAG-GC- -5'
11127 3' -58.2 NC_002794.1 + 37701 0.68 0.763813
Target:  5'- gUCuUCUCgUCCGCcuucUCCUCGCGAcCCGc -3'
miRNA:   3'- aAG-AGAG-AGGCGa---AGGGGCGCUaGGC- -5'
11127 3' -58.2 NC_002794.1 + 110379 0.68 0.761042
Target:  5'- -gCUCUCggCCGCUccucguccgaggacUCCUCG-GAUCCGg -3'
miRNA:   3'- aaGAGAGa-GGCGA--------------AGGGGCgCUAGGC- -5'
11127 3' -58.2 NC_002794.1 + 21149 0.68 0.754541
Target:  5'- aUCUUUCuUCCGCUUCCCaaaGCGGg--- -3'
miRNA:   3'- aAGAGAG-AGGCGAAGGGg--CGCUaggc -5'
11127 3' -58.2 NC_002794.1 + 141017 0.69 0.731887
Target:  5'- aUCUCUUUCgGCgccccgucgaggCCCCGaCGGUCCu -3'
miRNA:   3'- aAGAGAGAGgCGaa----------GGGGC-GCUAGGc -5'
11127 3' -58.2 NC_002794.1 + 25595 0.69 0.726146
Target:  5'- aUCUUUCUCCGCUcuuccaUCCgUUGCGcccGUCCGa -3'
miRNA:   3'- aAGAGAGAGGCGA------AGG-GGCGC---UAGGC- -5'
11127 3' -58.2 NC_002794.1 + 124433 0.69 0.706818
Target:  5'- gUCUCUCUcCCGCgcgUCCUCGCuuUCuCGu -3'
miRNA:   3'- aAGAGAGA-GGCGa--AGGGGCGcuAG-GC- -5'
11127 3' -58.2 NC_002794.1 + 67263 0.69 0.697061
Target:  5'- gUC-CUC-CCGC-UCCCCG-GGUCCGa -3'
miRNA:   3'- aAGaGAGaGGCGaAGGGGCgCUAGGC- -5'
11127 3' -58.2 NC_002794.1 + 110313 0.71 0.578212
Target:  5'- ---aCUCUCCGCUcgCCgCCGCGAcgCCGc -3'
miRNA:   3'- aagaGAGAGGCGAa-GG-GGCGCUa-GGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.