Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11127 | 3' | -58.2 | NC_002794.1 | + | 44035 | 0.75 | 0.37088 |
Target: 5'- gUCgCUCUCCGC--CCCCGgGGUCCGc -3' miRNA: 3'- aAGaGAGAGGCGaaGGGGCgCUAGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 21149 | 0.68 | 0.754541 |
Target: 5'- aUCUUUCuUCCGCUUCCCaaaGCGGg--- -3' miRNA: 3'- aAGAGAG-AGGCGAAGGGg--CGCUaggc -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 110379 | 0.68 | 0.761042 |
Target: 5'- -gCUCUCggCCGCUccucguccgaggacUCCUCG-GAUCCGg -3' miRNA: 3'- aaGAGAGa-GGCGA--------------AGGGGCgCUAGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 37701 | 0.68 | 0.763813 |
Target: 5'- gUCuUCUCgUCCGCcuucUCCUCGCGAcCCGc -3' miRNA: 3'- aAG-AGAG-AGGCGa---AGGGGCGCUaGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 141017 | 0.69 | 0.731887 |
Target: 5'- aUCUCUUUCgGCgccccgucgaggCCCCGaCGGUCCu -3' miRNA: 3'- aAGAGAGAGgCGaa----------GGGGC-GCUAGGc -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 67263 | 0.69 | 0.697061 |
Target: 5'- gUC-CUC-CCGC-UCCCCG-GGUCCGa -3' miRNA: 3'- aAGaGAGaGGCGaAGGGGCgCUAGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 124433 | 0.69 | 0.706818 |
Target: 5'- gUCUCUCUcCCGCgcgUCCUCGCuuUCuCGu -3' miRNA: 3'- aAGAGAGA-GGCGa--AGGGGCGcuAG-GC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 25595 | 0.69 | 0.726146 |
Target: 5'- aUCUUUCUCCGCUcuuccaUCCgUUGCGcccGUCCGa -3' miRNA: 3'- aAGAGAGAGGCGA------AGG-GGCGC---UAGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 110313 | 0.71 | 0.578212 |
Target: 5'- ---aCUCUCCGCUcgCCgCCGCGAcgCCGc -3' miRNA: 3'- aagaGAGAGGCGAa-GG-GGCGCUa-GGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 181867 | 0.68 | 0.763813 |
Target: 5'- aUCacgCUCCGCUgCCCCGgGGUCgCGa -3' miRNA: 3'- aAGagaGAGGCGAaGGGGCgCUAG-GC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 65883 | 0.67 | 0.816838 |
Target: 5'- -gCUCUCUCCGCUcCUUCGuCGcgUCGa -3' miRNA: 3'- aaGAGAGAGGCGAaGGGGC-GCuaGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 148257 | 0.67 | 0.816838 |
Target: 5'- uUUCUCUCUCCGCaggCUCUG-GAUCa- -3' miRNA: 3'- -AAGAGAGAGGCGaa-GGGGCgCUAGgc -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 12318 | 0.66 | 0.878445 |
Target: 5'- -aCUC-CUCCGCggUCCgCGUGA-CCGu -3' miRNA: 3'- aaGAGaGAGGCGa-AGGgGCGCUaGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 61777 | 0.66 | 0.864181 |
Target: 5'- cUCUCgccucccgaccgUCUCCGCccucccgUCCCCGCucaucUCCGg -3' miRNA: 3'- aAGAG------------AGAGGCGa------AGGGGCGcu---AGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 193635 | 0.66 | 0.856749 |
Target: 5'- uUUUUUUUUUCGUUUCCCCGguCGGcUCCGg -3' miRNA: 3'- -AAGAGAGAGGCGAAGGGGC--GCU-AGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 718 | 0.66 | 0.856749 |
Target: 5'- ---cCUCUCCGCgaCCCCGgGGgcUCUGu -3' miRNA: 3'- aagaGAGAGGCGaaGGGGCgCU--AGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 7511 | 0.66 | 0.849126 |
Target: 5'- -cCUCUCcuucuucuUCCGCUuuUCCCUGCGuggCCc -3' miRNA: 3'- aaGAGAG--------AGGCGA--AGGGGCGCua-GGc -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 185994 | 0.67 | 0.833328 |
Target: 5'- gUCUC-CUCCGCcgggCUCCGcCGcUCCGg -3' miRNA: 3'- aAGAGaGAGGCGaa--GGGGC-GCuAGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 85975 | 0.67 | 0.833328 |
Target: 5'- cUCUCaUCggaccgCCGCggCCCCGcCGAcgguUCCGa -3' miRNA: 3'- aAGAG-AGa-----GGCGaaGGGGC-GCU----AGGC- -5' |
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11127 | 3' | -58.2 | NC_002794.1 | + | 43779 | 0.67 | 0.841317 |
Target: 5'- aUCUCg--CCGaacgCCCCGCG-UCCGa -3' miRNA: 3'- aAGAGagaGGCgaa-GGGGCGCuAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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