miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11127 5' -47.2 NC_002794.1 + 41974 0.66 0.99995
Target:  5'- gGUCGGCUc-CACGccgagggucaGGGUgcccAGGAAGAGg -3'
miRNA:   3'- -CAGCCGAaaGUGC----------CCCAa---UCUUUUUC- -5'
11127 5' -47.2 NC_002794.1 + 138485 0.66 0.99995
Target:  5'- cGUCGGCggUCccgGCGGGGUUc------- -3'
miRNA:   3'- -CAGCCGaaAG---UGCCCCAAucuuuuuc -5'
11127 5' -47.2 NC_002794.1 + 148123 0.66 0.99995
Target:  5'- gGUCGGUgucgggCGCGGGGccgccgGGgcGAGGg -3'
miRNA:   3'- -CAGCCGaaa---GUGCCCCaa----UCuuUUUC- -5'
11127 5' -47.2 NC_002794.1 + 2831 0.66 0.999946
Target:  5'- --aGuGCUUugagUCACGGGGUgggaugauucugAGAAAAGGa -3'
miRNA:   3'- cagC-CGAA----AGUGCCCCAa-----------UCUUUUUC- -5'
11127 5' -47.2 NC_002794.1 + 5016 0.67 0.999884
Target:  5'- cUCGGaCUcgcgUC-CGGGGUgGGggGGGGg -3'
miRNA:   3'- cAGCC-GAa---AGuGCCCCAaUCuuUUUC- -5'
11127 5' -47.2 NC_002794.1 + 149291 0.67 0.999884
Target:  5'- -gCGGCUcgcUCACGGGGggcgggugUAGguAGGGc -3'
miRNA:   3'- caGCCGAa--AGUGCCCCa-------AUCuuUUUC- -5'
11127 5' -47.2 NC_002794.1 + 21272 0.67 0.999752
Target:  5'- -cCGGa--UCGCGGGGaagcGGAGAGAGa -3'
miRNA:   3'- caGCCgaaAGUGCCCCaa--UCUUUUUC- -5'
11127 5' -47.2 NC_002794.1 + 1825 0.67 0.999752
Target:  5'- cGUCGGcCUUaUACGGGGUccGggGGc- -3'
miRNA:   3'- -CAGCC-GAAaGUGCCCCAauCuuUUuc -5'
11127 5' -47.2 NC_002794.1 + 156372 0.68 0.999492
Target:  5'- cGUUGGCguaCACGGGGUcuucuucUAGAGc--- -3'
miRNA:   3'- -CAGCCGaaaGUGCCCCA-------AUCUUuuuc -5'
11127 5' -47.2 NC_002794.1 + 87506 0.69 0.998851
Target:  5'- --gGGgUUUgGgGGGGUUAGGAGGGGu -3'
miRNA:   3'- cagCCgAAAgUgCCCCAAUCUUUUUC- -5'
11127 5' -47.2 NC_002794.1 + 110472 0.71 0.993624
Target:  5'- cGUCGGC--UCGgGGGG-UAGAGAGGc -3'
miRNA:   3'- -CAGCCGaaAGUgCCCCaAUCUUUUUc -5'
11127 5' -47.2 NC_002794.1 + 149344 0.72 0.988869
Target:  5'- -cCGGCcggggUCGCGGGGgcgUGGAcgGAGu -3'
miRNA:   3'- caGCCGaa---AGUGCCCCa--AUCUuuUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.