miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11128 3' -55.1 NC_002794.1 + 44248 0.66 0.968942
Target:  5'- -cGGCUCgGugccGGgcGGCUCGGCcGCCGGg -3'
miRNA:   3'- cuUUGAGgC----UCuuCUGGGUCG-CGGCC- -5'
11128 3' -55.1 NC_002794.1 + 136926 0.66 0.968942
Target:  5'- gGGAGCcCCGAGuuGAC--GGCGCCGa -3'
miRNA:   3'- -CUUUGaGGCUCuuCUGggUCGCGGCc -5'
11128 3' -55.1 NC_002794.1 + 49073 0.66 0.968942
Target:  5'- -cGACUCgCGguaccAGAAGAcguaCCCGucGCGCCGGc -3'
miRNA:   3'- cuUUGAG-GC-----UCUUCU----GGGU--CGCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 43323 0.66 0.968942
Target:  5'- --uGCUCgaAGAcGACCacgCAGCGCCGGu -3'
miRNA:   3'- cuuUGAGgcUCUuCUGG---GUCGCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 181646 0.66 0.967136
Target:  5'- cGGGCUCCGGGAAGAaaaCCgCGGUGUacacguuggugugcgCGGa -3'
miRNA:   3'- cUUUGAGGCUCUUCU---GG-GUCGCG---------------GCC- -5'
11128 3' -55.1 NC_002794.1 + 91583 0.66 0.965892
Target:  5'- uGAAcuACUCCGAGu-GGCCgCugguGCGCgCGGc -3'
miRNA:   3'- -CUU--UGAGGCUCuuCUGG-Gu---CGCG-GCC- -5'
11128 3' -55.1 NC_002794.1 + 185784 0.66 0.965892
Target:  5'- --cACgucggCCGGcgcGggGACCCAcauCGCCGGg -3'
miRNA:   3'- cuuUGa----GGCU---CuuCUGGGUc--GCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 75479 0.66 0.965892
Target:  5'- -cGGCgCCGAGAcGGCCCGcGUacgaGCCGGc -3'
miRNA:   3'- cuUUGaGGCUCUuCUGGGU-CG----CGGCC- -5'
11128 3' -55.1 NC_002794.1 + 111100 0.66 0.965892
Target:  5'- cGGGC-CCGGcGGGACCguggccgucgaCGGCGCCGGc -3'
miRNA:   3'- cUUUGaGGCUcUUCUGG-----------GUCGCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 145697 0.66 0.965892
Target:  5'- cGAGCUcgaccugaggCCGAaaacGggGAUCgGGCGCUGGa -3'
miRNA:   3'- cUUUGA----------GGCU----CuuCUGGgUCGCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 112333 0.66 0.965892
Target:  5'- gGGAGCgcgCCGGccGgcGGCgCCGGCGgCGGg -3'
miRNA:   3'- -CUUUGa--GGCU--CuuCUG-GGUCGCgGCC- -5'
11128 3' -55.1 NC_002794.1 + 6367 0.66 0.962637
Target:  5'- uGGugUCgCGGucccuGGCCCuGCGCCGGg -3'
miRNA:   3'- cUUugAG-GCUcuu--CUGGGuCGCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 2475 0.66 0.962637
Target:  5'- cAAGCgCgCGAGGGcGAUCCGGUGgCCGGg -3'
miRNA:   3'- cUUUGaG-GCUCUU-CUGGGUCGC-GGCC- -5'
11128 3' -55.1 NC_002794.1 + 54239 0.66 0.962637
Target:  5'- uGAAGCggCCGAGcgcgcGGuCCaCGGCGCCGc -3'
miRNA:   3'- -CUUUGa-GGCUCu----UCuGG-GUCGCGGCc -5'
11128 3' -55.1 NC_002794.1 + 124144 0.66 0.962637
Target:  5'- --cGC-CCGGGAgcggucuccgcgGGGCCCgggagAGCGUCGGg -3'
miRNA:   3'- cuuUGaGGCUCU------------UCUGGG-----UCGCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 148174 0.66 0.962637
Target:  5'- aGggGgUCgCGAcgGAAGGaggggggucUCCGGCGCCGGc -3'
miRNA:   3'- -CuuUgAG-GCU--CUUCU---------GGGUCGCGGCC- -5'
11128 3' -55.1 NC_002794.1 + 53177 0.66 0.959172
Target:  5'- cGAAGCUCgGc-AGGGCCCAGCcgagccacCCGGa -3'
miRNA:   3'- -CUUUGAGgCucUUCUGGGUCGc-------GGCC- -5'
11128 3' -55.1 NC_002794.1 + 84439 0.66 0.959172
Target:  5'- -cGACgugCCGAacGAGGGCCUgccgccgaaAGCGCCGu -3'
miRNA:   3'- cuUUGa--GGCU--CUUCUGGG---------UCGCGGCc -5'
11128 3' -55.1 NC_002794.1 + 19567 0.66 0.959172
Target:  5'- --uGCUUCGAGGccgucACCCAGUGCCu- -3'
miRNA:   3'- cuuUGAGGCUCUuc---UGGGUCGCGGcc -5'
11128 3' -55.1 NC_002794.1 + 42578 0.66 0.959172
Target:  5'- cGGAC-CCGcggacggaGGAGGGCgCGGCGgCCGGg -3'
miRNA:   3'- cUUUGaGGC--------UCUUCUGgGUCGC-GGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.