miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11128 5' -56.6 NC_002794.1 + 49477 0.66 0.951325
Target:  5'- cGGCCG-CcGcGGGUCUgucgaccUCGUCGccGUCGu -3'
miRNA:   3'- -CCGGCuGaC-CCCAGA-------AGCAGCu-CAGC- -5'
11128 5' -56.6 NC_002794.1 + 14276 0.66 0.947694
Target:  5'- aGGUguuCGGCUGGaGcGUCagCGUCGAGgcgCGg -3'
miRNA:   3'- -CCG---GCUGACC-C-CAGaaGCAGCUCa--GC- -5'
11128 5' -56.6 NC_002794.1 + 138730 0.66 0.946025
Target:  5'- aGCCGGCUcgacGGGGUCccCGgcccuccgggggcCGAGUCGc -3'
miRNA:   3'- cCGGCUGA----CCCCAGaaGCa------------GCUCAGC- -5'
11128 5' -56.6 NC_002794.1 + 38128 0.66 0.929425
Target:  5'- cGCCaGCUGGGG----CGUgGAGUCGa -3'
miRNA:   3'- cCGGcUGACCCCagaaGCAgCUCAGC- -5'
11128 5' -56.6 NC_002794.1 + 178267 0.68 0.888993
Target:  5'- gGGCUGACcggagacGGGGUCg--GUCGAG-CGa -3'
miRNA:   3'- -CCGGCUGa------CCCCAGaagCAGCUCaGC- -5'
11128 5' -56.6 NC_002794.1 + 121454 0.68 0.868475
Target:  5'- cGGCCGcCgucGGGUCgacCGUCGAGaCGa -3'
miRNA:   3'- -CCGGCuGac-CCCAGaa-GCAGCUCaGC- -5'
11128 5' -56.6 NC_002794.1 + 116095 0.69 0.838397
Target:  5'- cGGUCGucGCcGGGGUCgaggUCGaggUCGAGUCc -3'
miRNA:   3'- -CCGGC--UGaCCCCAGa---AGC---AGCUCAGc -5'
11128 5' -56.6 NC_002794.1 + 132148 0.69 0.813997
Target:  5'- gGGCCcgggGAUcGGGGacggUCUggGUCGAGUCGg -3'
miRNA:   3'- -CCGG----CUGaCCCC----AGAagCAGCUCAGC- -5'
11128 5' -56.6 NC_002794.1 + 30988 0.71 0.742774
Target:  5'- cGGCgaCGGC-GGGGUCUUCGcCGGacGUCGc -3'
miRNA:   3'- -CCG--GCUGaCCCCAGAAGCaGCU--CAGC- -5'
11128 5' -56.6 NC_002794.1 + 156588 0.71 0.733383
Target:  5'- uGGCCGAcCUGGGGgguUCUUCcaCGuAGUCa -3'
miRNA:   3'- -CCGGCU-GACCCC---AGAAGcaGC-UCAGc -5'
11128 5' -56.6 NC_002794.1 + 135569 0.71 0.718192
Target:  5'- aGGCCGGCgaccgaucggaaacgUcgccGGGGUC--CGUCGGGUCGg -3'
miRNA:   3'- -CCGGCUG---------------A----CCCCAGaaGCAGCUCAGC- -5'
11128 5' -56.6 NC_002794.1 + 137347 0.75 0.538837
Target:  5'- cGGCuCGGCgucgucGGGGUCUUCuUCGAGcCGg -3'
miRNA:   3'- -CCG-GCUGa-----CCCCAGAAGcAGCUCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.