miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 142407 0.66 0.864181
Target:  5'- --gGCGGCgUCgGCGGCGCCG-GG-CGCg -3'
miRNA:   3'- uugCGUCG-AG-UGCCGUGGCaCUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 69405 0.66 0.864181
Target:  5'- --aGCGGC-CA-GGCGCCGa-GCCGCg -3'
miRNA:   3'- uugCGUCGaGUgCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 50431 0.66 0.864181
Target:  5'- -cCGCGGUggcCACgaucuGGCAcCCGUG-CCGCa -3'
miRNA:   3'- uuGCGUCGa--GUG-----CCGU-GGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 23851 0.66 0.864181
Target:  5'- uGACGCAacgGCgcgCACcgGGCuucaaACCG-GACCGCg -3'
miRNA:   3'- -UUGCGU---CGa--GUG--CCG-----UGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 113493 0.66 0.864181
Target:  5'- --aGgAGCUCGCGcGCgGCCGaGAgCCGCg -3'
miRNA:   3'- uugCgUCGAGUGC-CG-UGGCaCU-GGCG- -5'
11129 3' -58.6 NC_002794.1 + 53537 0.66 0.864181
Target:  5'- gGGCGCGGCggccgCACaGC-CCGUGGaCGUa -3'
miRNA:   3'- -UUGCGUCGa----GUGcCGuGGCACUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 113877 0.66 0.864181
Target:  5'- cGCGCucGGC-CGCGGCGCgCGUcGgCGCg -3'
miRNA:   3'- uUGCG--UCGaGUGCCGUG-GCAcUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 112733 0.66 0.864181
Target:  5'- gGACGCGGaaggCGCGGUgcuCCGcGGCgGCg -3'
miRNA:   3'- -UUGCGUCga--GUGCCGu--GGCaCUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 108406 0.66 0.864181
Target:  5'- cGGCgGCGGCgcccacCACGGCGCCcaccCCGCg -3'
miRNA:   3'- -UUG-CGUCGa-----GUGCCGUGGcacuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 85534 0.66 0.864181
Target:  5'- -cCGCGGCUCcgcccaacAUGGCcCCGgGACgGCu -3'
miRNA:   3'- uuGCGUCGAG--------UGCCGuGGCaCUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 50033 0.66 0.86271
Target:  5'- cAGCGCGuccucgcGCUUGCGGCGgCUGaccuugaUGACCGUa -3'
miRNA:   3'- -UUGCGU-------CGAGUGCCGU-GGC-------ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 145834 0.66 0.861972
Target:  5'- gAGCGCGucgacggucgccacGCUCgACGaGcCGCCGagGGCCGCg -3'
miRNA:   3'- -UUGCGU--------------CGAG-UGC-C-GUGGCa-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 82793 0.66 0.856749
Target:  5'- -cCGCcGCgucCACGcGCGCCGcGACcCGCg -3'
miRNA:   3'- uuGCGuCGa--GUGC-CGUGGCaCUG-GCG- -5'
11129 3' -58.6 NC_002794.1 + 105408 0.66 0.856749
Target:  5'- cGCGCGGaUCuCGGCcuCCaggGUGGCCGCc -3'
miRNA:   3'- uUGCGUCgAGuGCCGu-GG---CACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 108451 0.66 0.856749
Target:  5'- -uCGCGGCg-GCGGCccGCCGgcacgGGCCGa -3'
miRNA:   3'- uuGCGUCGagUGCCG--UGGCa----CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 124017 0.66 0.856749
Target:  5'- --gGCGGC-CGCGGaagagACgGUGGCCGUc -3'
miRNA:   3'- uugCGUCGaGUGCCg----UGgCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 177566 0.66 0.856749
Target:  5'- gGACG-AGCuUCGCGaCGCCGUGACuCGa -3'
miRNA:   3'- -UUGCgUCG-AGUGCcGUGGCACUG-GCg -5'
11129 3' -58.6 NC_002794.1 + 154472 0.66 0.856749
Target:  5'- aGGCGCugcaAGCUUACGGCauGCUuUGAacCCGCu -3'
miRNA:   3'- -UUGCG----UCGAGUGCCG--UGGcACU--GGCG- -5'
11129 3' -58.6 NC_002794.1 + 14631 0.66 0.856749
Target:  5'- aGACGgGGCcgggCACGGagaCGCCGgcGCCGCg -3'
miRNA:   3'- -UUGCgUCGa---GUGCC---GUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 80054 0.66 0.856749
Target:  5'- cGGCGCgAGC-CGCGGUACU-UGGCCcGCc -3'
miRNA:   3'- -UUGCG-UCGaGUGCCGUGGcACUGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.