Results 41 - 60 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11129 | 3' | -58.6 | NC_002794.1 | + | 53537 | 0.66 | 0.864181 |
Target: 5'- gGGCGCGGCggccgCACaGC-CCGUGGaCGUa -3' miRNA: 3'- -UUGCGUCGa----GUGcCGuGGCACUgGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 113877 | 0.66 | 0.864181 |
Target: 5'- cGCGCucGGC-CGCGGCGCgCGUcGgCGCg -3' miRNA: 3'- uUGCG--UCGaGUGCCGUG-GCAcUgGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 112733 | 0.66 | 0.864181 |
Target: 5'- gGACGCGGaaggCGCGGUgcuCCGcGGCgGCg -3' miRNA: 3'- -UUGCGUCga--GUGCCGu--GGCaCUGgCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 108406 | 0.66 | 0.864181 |
Target: 5'- cGGCgGCGGCgcccacCACGGCGCCcaccCCGCg -3' miRNA: 3'- -UUG-CGUCGa-----GUGCCGUGGcacuGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 85534 | 0.66 | 0.864181 |
Target: 5'- -cCGCGGCUCcgcccaacAUGGCcCCGgGACgGCu -3' miRNA: 3'- uuGCGUCGAG--------UGCCGuGGCaCUGgCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 154472 | 0.66 | 0.856749 |
Target: 5'- aGGCGCugcaAGCUUACGGCauGCUuUGAacCCGCu -3' miRNA: 3'- -UUGCG----UCGAGUGCCG--UGGcACU--GGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 177566 | 0.66 | 0.856749 |
Target: 5'- gGACG-AGCuUCGCGaCGCCGUGACuCGa -3' miRNA: 3'- -UUGCgUCG-AGUGCcGUGGCACUG-GCg -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 66844 | 0.66 | 0.849126 |
Target: 5'- gGGCGCcGC-CGuCGGCGCgGcgaGGCCGCg -3' miRNA: 3'- -UUGCGuCGaGU-GCCGUGgCa--CUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 182812 | 0.66 | 0.849126 |
Target: 5'- -uCGaCAGCUCguccagccGCGGCACCGacacGACCa- -3' miRNA: 3'- uuGC-GUCGAG--------UGCCGUGGCa---CUGGcg -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 68320 | 0.66 | 0.849126 |
Target: 5'- cGACGC-GUUcCGCGGCcUgGUGACCGg -3' miRNA: 3'- -UUGCGuCGA-GUGCCGuGgCACUGGCg -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 190990 | 0.66 | 0.849126 |
Target: 5'- cAGCGCGGCg-ACGGCGUCGcgaucGGCCGUu -3' miRNA: 3'- -UUGCGUCGagUGCCGUGGCa----CUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 31319 | 0.66 | 0.849126 |
Target: 5'- gAGCGUgAGuCUCGuCGGCucggcgcccGCCGUGuCCGCc -3' miRNA: 3'- -UUGCG-UC-GAGU-GCCG---------UGGCACuGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 142466 | 0.66 | 0.849126 |
Target: 5'- cGAUG-AGCgC-CGGCACCGUGGaCGCg -3' miRNA: 3'- -UUGCgUCGaGuGCCGUGGCACUgGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 34224 | 0.66 | 0.855995 |
Target: 5'- gAGCGCAaggugcaggagcuGCacgCGCGGCuGCCGccgcaggcgGACCGCg -3' miRNA: 3'- -UUGCGU-------------CGa--GUGCCG-UGGCa--------CUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 81419 | 0.66 | 0.856749 |
Target: 5'- --aGCuGCUCGCccGGCuuCGaGACCGCg -3' miRNA: 3'- uugCGuCGAGUG--CCGugGCaCUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 80054 | 0.66 | 0.856749 |
Target: 5'- cGGCGCgAGC-CGCGGUACU-UGGCCcGCc -3' miRNA: 3'- -UUGCG-UCGaGUGCCGUGGcACUGG-CG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 82793 | 0.66 | 0.856749 |
Target: 5'- -cCGCcGCgucCACGcGCGCCGcGACcCGCg -3' miRNA: 3'- uuGCGuCGa--GUGC-CGUGGCaCUG-GCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 105408 | 0.66 | 0.856749 |
Target: 5'- cGCGCGGaUCuCGGCcuCCaggGUGGCCGCc -3' miRNA: 3'- uUGCGUCgAGuGCCGu-GG---CACUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 108451 | 0.66 | 0.856749 |
Target: 5'- -uCGCGGCg-GCGGCccGCCGgcacgGGCCGa -3' miRNA: 3'- uuGCGUCGagUGCCG--UGGCa----CUGGCg -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 124017 | 0.66 | 0.856749 |
Target: 5'- --gGCGGC-CGCGGaagagACgGUGGCCGUc -3' miRNA: 3'- uugCGUCGaGUGCCg----UGgCACUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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