miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 81419 0.66 0.856749
Target:  5'- --aGCuGCUCGCccGGCuuCGaGACCGCg -3'
miRNA:   3'- uugCGuCGAGUG--CCGugGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 34224 0.66 0.855995
Target:  5'- gAGCGCAaggugcaggagcuGCacgCGCGGCuGCCGccgcaggcgGACCGCg -3'
miRNA:   3'- -UUGCGU-------------CGa--GUGCCG-UGGCa--------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 14714 0.67 0.816838
Target:  5'- gAGCGCuGCUCGCGGCuuCGgcucggGGuCCGg -3'
miRNA:   3'- -UUGCGuCGAGUGCCGugGCa-----CU-GGCg -5'
11129 3' -58.6 NC_002794.1 + 59174 0.67 0.816838
Target:  5'- uGGCGCAGCUgCugGaCcCCGUGGCgGUc -3'
miRNA:   3'- -UUGCGUCGA-GugCcGuGGCACUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 123332 0.67 0.809207
Target:  5'- -cCGCAGCUggggguggcguuccaACGGUACCG--GCCGCu -3'
miRNA:   3'- uuGCGUCGAg--------------UGCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 21370 0.67 0.813462
Target:  5'- aGACGCGGCg-GCGGcCGCCGUcucuuccucggacACCGCc -3'
miRNA:   3'- -UUGCGUCGagUGCC-GUGGCAc------------UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 111318 0.67 0.808351
Target:  5'- aGACGCcgGGCcaGCGGCGCg--GGCCGCa -3'
miRNA:   3'- -UUGCG--UCGagUGCCGUGgcaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 61551 0.67 0.808351
Target:  5'- cGACGCcGC-CGCGGCGgCG--GCCGCc -3'
miRNA:   3'- -UUGCGuCGaGUGCCGUgGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 70666 0.67 0.808351
Target:  5'- uGCGCGGCggccgcCGCGGCGgugacgucCUGUcGCCGCu -3'
miRNA:   3'- uUGCGUCGa-----GUGCCGU--------GGCAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 126382 0.67 0.808351
Target:  5'- gGGCGCcggGGCcugCGCGGCGgCGUGcGCgGCg -3'
miRNA:   3'- -UUGCG---UCGa--GUGCCGUgGCAC-UGgCG- -5'
11129 3' -58.6 NC_002794.1 + 66707 0.67 0.816838
Target:  5'- uACGCcGCgcccggCACGGcCGCCGccACCGCc -3'
miRNA:   3'- uUGCGuCGa-----GUGCC-GUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 136326 0.67 0.816838
Target:  5'- -cCGCAGCUCuucuCGGUGgCG-GGCCaGCg -3'
miRNA:   3'- uuGCGUCGAGu---GCCGUgGCaCUGG-CG- -5'
11129 3' -58.6 NC_002794.1 + 62891 0.67 0.820188
Target:  5'- uGACGCcccagaaccccuaccAGCUcCGCGuGUACCGUaagcacuacGGCCGCu -3'
miRNA:   3'- -UUGCG---------------UCGA-GUGC-CGUGGCA---------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 114486 0.67 0.816838
Target:  5'- cGCGUacccGGUcCACGcGCGCCG-GACCGUc -3'
miRNA:   3'- uUGCG----UCGaGUGC-CGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 116845 0.67 0.816838
Target:  5'- cGCGCGGUggaUCuucauGCGGCgGCCGUG-UCGCg -3'
miRNA:   3'- uUGCGUCG---AG-----UGCCG-UGGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 45925 0.67 0.816838
Target:  5'- cGACGaGGCUCGCGcuucccCGCCcgGUGACCGUc -3'
miRNA:   3'- -UUGCgUCGAGUGCc-----GUGG--CACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 194503 0.67 0.816838
Target:  5'- cGCGCccGGCcCGCGGCcCgCGUG-CCGCc -3'
miRNA:   3'- uUGCG--UCGaGUGCCGuG-GCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 11792 0.67 0.816838
Target:  5'- -cCGCGGUgucCGUGGCGCCGccGCCGCc -3'
miRNA:   3'- uuGCGUCGa--GUGCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 151569 0.67 0.816838
Target:  5'- uGACGUAGCgccccccgGCGGCGCgCGccGCCGCc -3'
miRNA:   3'- -UUGCGUCGag------UGCCGUG-GCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 124394 0.67 0.807494
Target:  5'- --gGCGGCgcgucgccggucgUCGgGGCGCCGUccGCCGCg -3'
miRNA:   3'- uugCGUCG-------------AGUgCCGUGGCAc-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.