miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 75654 0.71 0.558598
Target:  5'- --aGCGGCa-GCGGCGCCGUccGCCGCu -3'
miRNA:   3'- uugCGUCGagUGCCGUGGCAc-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 65998 0.71 0.558598
Target:  5'- gGGCGguGaUCcCGGCACCGaggcGGCCGCg -3'
miRNA:   3'- -UUGCguCgAGuGCCGUGGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 57393 0.71 0.568384
Target:  5'- uACGUcaccGGCUC-CGGCGCCcgcGUGGCCGg -3'
miRNA:   3'- uUGCG----UCGAGuGCCGUGG---CACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 101253 0.7 0.61882
Target:  5'- cGCGCAGCggggggccgccccCGGCGCCGgUGGCgGCg -3'
miRNA:   3'- uUGCGUCGagu----------GCCGUGGC-ACUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 95584 0.7 0.646672
Target:  5'- uAUGuCGGCUCgaucuacGCGGCGCCG-GAgCGCa -3'
miRNA:   3'- uUGC-GUCGAG-------UGCCGUGGCaCUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 145322 0.7 0.637721
Target:  5'- cGCGCGGCggGCGGCGCuCG-GGCCcgaGCg -3'
miRNA:   3'- uUGCGUCGagUGCCGUG-GCaCUGG---CG- -5'
11129 3' -58.6 NC_002794.1 + 81770 0.7 0.617826
Target:  5'- --aGCAGCUC-CGGCACgGccGuCCGCg -3'
miRNA:   3'- uugCGUCGAGuGCCGUGgCa-CuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 106976 0.7 0.637721
Target:  5'- cGCGCGGCggccggCACGGCG--GUGGCgGCg -3'
miRNA:   3'- uUGCGUCGa-----GUGCCGUggCACUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 67210 0.7 0.597972
Target:  5'- gGGCGguGCgcuCGGCGCCG-GGCgGCu -3'
miRNA:   3'- -UUGCguCGaguGCCGUGGCaCUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 106417 0.7 0.616832
Target:  5'- cGGCGCcggGGCUCAUGGCGCUGUuggagaaGGCgGUg -3'
miRNA:   3'- -UUGCG---UCGAGUGCCGUGGCA-------CUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 58435 0.7 0.647666
Target:  5'- aGACGCcgaGGC-CACGcuGCGCC-UGGCCGCg -3'
miRNA:   3'- -UUGCG---UCGaGUGC--CGUGGcACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 104263 0.7 0.617826
Target:  5'- gGGCaGCcGCUCGgcCGGCACCGUG-CCGa -3'
miRNA:   3'- -UUG-CGuCGAGU--GCCGUGGCACuGGCg -5'
11129 3' -58.6 NC_002794.1 + 12229 0.7 0.637721
Target:  5'- --gGCGGCgccgGCGGCGCCGU--CCGCg -3'
miRNA:   3'- uugCGUCGag--UGCCGUGGCAcuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 34093 0.7 0.637721
Target:  5'- --gGCAGCcgUCggGCGGC-CCG-GACCGCg -3'
miRNA:   3'- uugCGUCG--AG--UGCCGuGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 172453 0.7 0.636726
Target:  5'- uGGCGaccugaaCAGgUaACGGuCACCGUGACCGCu -3'
miRNA:   3'- -UUGC-------GUCgAgUGCC-GUGGCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 126277 0.7 0.637721
Target:  5'- --gGCGGCgCugGGCuuGCUGUGcGCCGCg -3'
miRNA:   3'- uugCGUCGaGugCCG--UGGCAC-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 114655 0.7 0.637721
Target:  5'- -cCGguGCUguucgCGCGcGCGCCGguacucgGACCGCa -3'
miRNA:   3'- uuGCguCGA-----GUGC-CGUGGCa------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 150396 0.7 0.647666
Target:  5'- gGGCGCccuGgUUGCGGCagaaGCCGUGGcCCGCg -3'
miRNA:   3'- -UUGCGu--CgAGUGCCG----UGGCACU-GGCG- -5'
11129 3' -58.6 NC_002794.1 + 187729 0.7 0.60789
Target:  5'- cACGCcGCUaUACGGCACCGUcGCCa- -3'
miRNA:   3'- uUGCGuCGA-GUGCCGUGGCAcUGGcg -5'
11129 3' -58.6 NC_002794.1 + 47935 0.7 0.606898
Target:  5'- cGACGCAGaUCGgcgccgcgcguccCGGCGCCGgcugggcGACCGCc -3'
miRNA:   3'- -UUGCGUCgAGU-------------GCCGUGGCa------CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.