miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 46313 0.83 0.121904
Target:  5'- gAGCGCGGCggCgACGGCGCCGUcGCCGCg -3'
miRNA:   3'- -UUGCGUCGa-G-UGCCGUGGCAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 53074 0.8 0.195331
Target:  5'- cGCGCcgccAGCUCGCGGCACCG-GGCCa- -3'
miRNA:   3'- uUGCG----UCGAGUGCCGUGGCaCUGGcg -5'
11129 3' -58.6 NC_002794.1 + 14507 0.79 0.225558
Target:  5'- -cCGC-GCUCGCGGCGCuCGUGgcGCCGCu -3'
miRNA:   3'- uuGCGuCGAGUGCCGUG-GCAC--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 193605 0.78 0.253698
Target:  5'- -gUGUAGCguacCGCGGCGCCGUGGCCa- -3'
miRNA:   3'- uuGCGUCGa---GUGCCGUGGCACUGGcg -5'
11129 3' -58.6 NC_002794.1 + 68915 0.77 0.259661
Target:  5'- cGCGgGGCUCGCGGCGuccucgucgcCCGcgGGCCGCg -3'
miRNA:   3'- uUGCgUCGAGUGCCGU----------GGCa-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 122198 0.77 0.284659
Target:  5'- cGACGCGGCgaaGCGGUGCCGgcGCCGCu -3'
miRNA:   3'- -UUGCGUCGag-UGCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 36900 0.77 0.284659
Target:  5'- gAGCGUccagAGgUCGCGGCGCCGgccccgcGACCGCg -3'
miRNA:   3'- -UUGCG----UCgAGUGCCGUGGCa------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 98368 0.77 0.291198
Target:  5'- cGCGCGGCUgGCGGgAgaCGUGAUCGCg -3'
miRNA:   3'- uUGCGUCGAgUGCCgUg-GCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 107522 0.76 0.31152
Target:  5'- cGACGCcgacGGCcggCGCGGCGCCGgcggcgacGACCGCg -3'
miRNA:   3'- -UUGCG----UCGa--GUGCCGUGGCa-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 91148 0.76 0.325656
Target:  5'- gGACGguGCUgCugGGCGCCGUGGagGCc -3'
miRNA:   3'- -UUGCguCGA-GugCCGUGGCACUggCG- -5'
11129 3' -58.6 NC_002794.1 + 107016 0.76 0.332901
Target:  5'- cGACGguGCUCaccGCGGCGCCGcUGGggacccCCGCg -3'
miRNA:   3'- -UUGCguCGAG---UGCCGUGGC-ACU------GGCG- -5'
11129 3' -58.6 NC_002794.1 + 103924 0.76 0.332901
Target:  5'- cAACGCGGCgaGCaGCGCgCGUGGCCGCc -3'
miRNA:   3'- -UUGCGUCGagUGcCGUG-GCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 194826 0.75 0.347743
Target:  5'- cGACGCGcGCUCGCGGC-CCGgcgucuccaGCCGCa -3'
miRNA:   3'- -UUGCGU-CGAGUGCCGuGGCac-------UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 121397 0.75 0.37088
Target:  5'- -cCGCGGC---CGGCGCCGgGACCGCg -3'
miRNA:   3'- uuGCGUCGaguGCCGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 58856 0.75 0.37088
Target:  5'- -gUGCAGCUCGucgccgacCGGCAgCCGUGcgcGCCGCg -3'
miRNA:   3'- uuGCGUCGAGU--------GCCGU-GGCAC---UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 56305 0.75 0.37088
Target:  5'- cGCGCGG-UCGCGGUcgcuggcgGCCGUGGCCGg -3'
miRNA:   3'- uUGCGUCgAGUGCCG--------UGGCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 19070 0.74 0.386878
Target:  5'- -cUGCGG-UCACGGUGCCGUGAgCUGCg -3'
miRNA:   3'- uuGCGUCgAGUGCCGUGGCACU-GGCG- -5'
11129 3' -58.6 NC_002794.1 + 134131 0.74 0.390132
Target:  5'- cGGCGCGGCgagCGCGGaagcUcgguccguguugcugGCCGUGGCCGCg -3'
miRNA:   3'- -UUGCGUCGa--GUGCC----G---------------UGGCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 54252 0.74 0.395046
Target:  5'- cGCGCGGUcCACGGCGCCGcgucgGGCCa- -3'
miRNA:   3'- uUGCGUCGaGUGCCGUGGCa----CUGGcg -5'
11129 3' -58.6 NC_002794.1 + 63703 0.74 0.395046
Target:  5'- cGACGaCGGCgC-CGGCGCCGccgGACCGCc -3'
miRNA:   3'- -UUGC-GUCGaGuGCCGUGGCa--CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.