miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 107177 0.74 0.411711
Target:  5'- uACGCGGCggagC-CGGCGCCGccGCCGCc -3'
miRNA:   3'- uUGCGUCGa---GuGCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 183142 0.74 0.411711
Target:  5'- cGCGCAGCUcCGCGGaCACgCGgccgGGCUGCc -3'
miRNA:   3'- uUGCGUCGA-GUGCC-GUG-GCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 98967 0.74 0.420206
Target:  5'- gGGCGCcGUcgGCGGCGCCGUGGCCu- -3'
miRNA:   3'- -UUGCGuCGagUGCCGUGGCACUGGcg -5'
11129 3' -58.6 NC_002794.1 + 141617 0.74 0.426214
Target:  5'- cGAC-CGGCUCGCGGUcuagcgacgggaagGCCGgcgUGGCCGCg -3'
miRNA:   3'- -UUGcGUCGAGUGCCG--------------UGGC---ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 21928 0.73 0.437507
Target:  5'- cGACgGCGGCggCGCGGCgcucgucgaagGCCGUcGGCCGCu -3'
miRNA:   3'- -UUG-CGUCGa-GUGCCG-----------UGGCA-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 49445 0.73 0.44631
Target:  5'- cGGCGCGGUcgUCGCcguGGCgccGCCGUGACCGg -3'
miRNA:   3'- -UUGCGUCG--AGUG---CCG---UGGCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 80409 0.73 0.455211
Target:  5'- -cCGCGGCcCAggUGGCGCCGggcggGGCCGCc -3'
miRNA:   3'- uuGCGUCGaGU--GCCGUGGCa----CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 94488 0.73 0.455211
Target:  5'- gGACGCGGC-CGCGG-GCCGUGGCgGg -3'
miRNA:   3'- -UUGCGUCGaGUGCCgUGGCACUGgCg -5'
11129 3' -58.6 NC_002794.1 + 120076 0.73 0.455211
Target:  5'- cGACGCGGCggugGCGGCgacgACCGUGccgagcgcGCCGCg -3'
miRNA:   3'- -UUGCGUCGag--UGCCG----UGGCAC--------UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 12542 0.73 0.464207
Target:  5'- gAACGCGGCgcgCACGGCuACCGgcgcAUCGCc -3'
miRNA:   3'- -UUGCGUCGa--GUGCCG-UGGCac--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 56907 0.73 0.473295
Target:  5'- cGCGUGGC-CACgGGCGCCG-GGCUGCc -3'
miRNA:   3'- uUGCGUCGaGUG-CCGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 111630 0.73 0.473295
Target:  5'- -cCGCGGC-CGCcgccggucgGGCGCCGcGGCCGCg -3'
miRNA:   3'- uuGCGUCGaGUG---------CCGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 141566 0.73 0.482471
Target:  5'- -cCGCGGC-CGCGGCcuCCGUGAucaugacgcCCGCg -3'
miRNA:   3'- uuGCGUCGaGUGCCGu-GGCACU---------GGCG- -5'
11129 3' -58.6 NC_002794.1 + 184041 0.72 0.491733
Target:  5'- cGCGCAGCgCGCGGUcgCG-GGCCGCg -3'
miRNA:   3'- uUGCGUCGaGUGCCGugGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 110613 0.72 0.491733
Target:  5'- aAGCGgAGCgggagcCGCGGCGCCGcGGCgGCg -3'
miRNA:   3'- -UUGCgUCGa-----GUGCCGUGGCaCUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 147132 0.72 0.501076
Target:  5'- cGACgGCGGUUCgagACGGCcCCGgGGCCGCg -3'
miRNA:   3'- -UUG-CGUCGAG---UGCCGuGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 185209 0.72 0.501076
Target:  5'- -uCGCGGCUCGCGccgcggagagucGCGCCGaccGCCGCg -3'
miRNA:   3'- uuGCGUCGAGUGC------------CGUGGCac-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 115982 0.72 0.510496
Target:  5'- gGACGgGGa--GCGGCGCCGcggaGACCGCg -3'
miRNA:   3'- -UUGCgUCgagUGCCGUGGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 118268 0.72 0.510496
Target:  5'- -cCGgGGCg-GCGGCGCCGgcgucgggGACCGCg -3'
miRNA:   3'- uuGCgUCGagUGCCGUGGCa-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 18537 0.72 0.510496
Target:  5'- gAACGCgAGCacgagCACGGCggcgaccgcgACCGUGcCCGCg -3'
miRNA:   3'- -UUGCG-UCGa----GUGCCG----------UGGCACuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.