miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 44495 0.72 0.519036
Target:  5'- aGACGUuGuCUCACGGCGgcccagaccgggcCCGUGuCCGCg -3'
miRNA:   3'- -UUGCGuC-GAGUGCCGU-------------GGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 37908 0.72 0.519036
Target:  5'- --aGCGGCUCGcCGGCcucaacgucaaccGCCGcGGCCGCc -3'
miRNA:   3'- uugCGUCGAGU-GCCG-------------UGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 147701 0.72 0.519989
Target:  5'- cGAUGCGGCgCACGuGCGCCaGU-ACCGCg -3'
miRNA:   3'- -UUGCGUCGaGUGC-CGUGG-CAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 14190 0.72 0.519989
Target:  5'- aGACGuCAGCgUCcCGGC-CCGcUGGCCGCc -3'
miRNA:   3'- -UUGC-GUCG-AGuGCCGuGGC-ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 44327 0.72 0.519989
Target:  5'- gAGCGCGGCggcgaagaagACGGCGCCGgcgaGACCGa -3'
miRNA:   3'- -UUGCGUCGag--------UGCCGUGGCa---CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 33304 0.72 0.52955
Target:  5'- -cUGCGGCUCugGGCGgCGUccauCCGCc -3'
miRNA:   3'- uuGCGUCGAGugCCGUgGCAcu--GGCG- -5'
11129 3' -58.6 NC_002794.1 + 118639 0.72 0.52955
Target:  5'- uGCGcCAGCUCgGCGGCcagcucguCCGUGGgCGCg -3'
miRNA:   3'- uUGC-GUCGAG-UGCCGu-------GGCACUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 186280 0.72 0.539176
Target:  5'- uGGCGCGGCggcacCGCGGCcaggcgGCCGgucGCCGCg -3'
miRNA:   3'- -UUGCGUCGa----GUGCCG------UGGCac-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 50663 0.72 0.539176
Target:  5'- cAugGCGGC-CGCGGCGCUc--GCCGCg -3'
miRNA:   3'- -UugCGUCGaGUGCCGUGGcacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 125926 0.72 0.539176
Target:  5'- cACGCuGCUCGuCGaGCAguuccUCGUGGCCGCc -3'
miRNA:   3'- uUGCGuCGAGU-GC-CGU-----GGCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 156400 0.71 0.54886
Target:  5'- --aGCGGC---CGGCGCCGcGGCCGCg -3'
miRNA:   3'- uugCGUCGaguGCCGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 143544 0.71 0.54886
Target:  5'- aGGCGCGGCacgagCACGGUggcccaGCCGUGcgcGCCGUc -3'
miRNA:   3'- -UUGCGUCGa----GUGCCG------UGGCAC---UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 99931 0.71 0.54886
Target:  5'- cGGCGUGGuCUUGCGGCuguucgGCCG-GACCGCc -3'
miRNA:   3'- -UUGCGUC-GAGUGCCG------UGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 75654 0.71 0.558598
Target:  5'- --aGCGGCa-GCGGCGCCGUccGCCGCu -3'
miRNA:   3'- uugCGUCGagUGCCGUGGCAc-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 127720 0.71 0.558598
Target:  5'- cGAUGgGGCUCgcggACGGCACCGaacGGCCGg -3'
miRNA:   3'- -UUGCgUCGAG----UGCCGUGGCa--CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 65998 0.71 0.558598
Target:  5'- gGGCGguGaUCcCGGCACCGaggcGGCCGCg -3'
miRNA:   3'- -UUGCguCgAGuGCCGUGGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 127337 0.71 0.566423
Target:  5'- gAGCGCcgcugccgagacGCUCGCGGCGgCGgcgcGGCCGCu -3'
miRNA:   3'- -UUGCGu-----------CGAGUGCCGUgGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 21451 0.71 0.568384
Target:  5'- cGCGUcGCUCgGCGuCGCCGUGACgGCa -3'
miRNA:   3'- uUGCGuCGAG-UGCcGUGGCACUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 57393 0.71 0.568384
Target:  5'- uACGUcaccGGCUC-CGGCGCCcgcGUGGCCGg -3'
miRNA:   3'- uUGCG----UCGAGuGCCGUGG---CACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 100545 0.71 0.578212
Target:  5'- --aGCAGCggGCGGCcuuccCCGUGGCCGa -3'
miRNA:   3'- uugCGUCGagUGCCGu----GGCACUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.