miRNA display CGI


Results 81 - 100 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 58435 0.7 0.647666
Target:  5'- aGACGCcgaGGC-CACGcuGCGCC-UGGCCGCg -3'
miRNA:   3'- -UUGCG---UCGaGUGC--CGUGGcACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 81633 0.7 0.647666
Target:  5'- -cCGCAGCUUccuGC-GCACCGUcgucuGGCCGCc -3'
miRNA:   3'- uuGCGUCGAG---UGcCGUGGCA-----CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 150396 0.7 0.647666
Target:  5'- gGGCGCccuGgUUGCGGCagaaGCCGUGGcCCGCg -3'
miRNA:   3'- -UUGCGu--CgAGUGCCG----UGGCACU-GGCG- -5'
11129 3' -58.6 NC_002794.1 + 179962 0.69 0.667514
Target:  5'- gAGCGaCAGCaggaGCGGCaggagccaagGCgGUGGCCGCg -3'
miRNA:   3'- -UUGC-GUCGag--UGCCG----------UGgCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 88943 0.69 0.667514
Target:  5'- uGGCGCGGUguaacUCGCucGGUACgagCGUGGCCGCc -3'
miRNA:   3'- -UUGCGUCG-----AGUG--CCGUG---GCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 34756 0.69 0.667514
Target:  5'- cGGCGCGGUgggaCGCGGCACgGccGcCCGCg -3'
miRNA:   3'- -UUGCGUCGa---GUGCCGUGgCa-CuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 185064 0.69 0.667514
Target:  5'- -cUGCAGCcgcCGCGGC-CCGUcGCCGUa -3'
miRNA:   3'- uuGCGUCGa--GUGCCGuGGCAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 37754 0.69 0.675426
Target:  5'- cGGCGCGGCggCGcCGGCgggagcgGCCGUcgucgucGGCCGCa -3'
miRNA:   3'- -UUGCGUCGa-GU-GCCG-------UGGCA-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 48041 0.69 0.677401
Target:  5'- gGACGCcgaguGCgugcugggCACGGCGCUGaUGGCCGg -3'
miRNA:   3'- -UUGCGu----CGa-------GUGCCGUGGC-ACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 55803 0.69 0.677401
Target:  5'- gAGCGCAGCgccgggCGCgGGCGCgCGcUGAUgGCg -3'
miRNA:   3'- -UUGCGUCGa-----GUG-CCGUG-GC-ACUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 102184 0.69 0.686269
Target:  5'- cGCGCGGCgaggaccUgGCGGcCGCCGUGACgGa -3'
miRNA:   3'- uUGCGUCG-------AgUGCC-GUGGCACUGgCg -5'
11129 3' -58.6 NC_002794.1 + 13129 0.69 0.686269
Target:  5'- cGCGCGGCUCGCucgcgcgGGUcgucGCCGUcccauGCCGCa -3'
miRNA:   3'- uUGCGUCGAGUG-------CCG----UGGCAc----UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 186940 0.69 0.687253
Target:  5'- -cCGCcGC-CACGGCccccggGCCGcUGGCCGCc -3'
miRNA:   3'- uuGCGuCGaGUGCCG------UGGC-ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 56162 0.69 0.687253
Target:  5'- cAGCgGCAGCggccccggugCACGuagaGCACCG-GGCCGCg -3'
miRNA:   3'- -UUG-CGUCGa---------GUGC----CGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 156485 0.69 0.687253
Target:  5'- cGGgGCGGCUUuaccgguuuaGCGGC-CCGuUGAUCGCg -3'
miRNA:   3'- -UUgCGUCGAG----------UGCCGuGGC-ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 52762 0.69 0.687253
Target:  5'- -cCGC-GC-CGCGGC-CCG-GGCCGCg -3'
miRNA:   3'- uuGCGuCGaGUGCCGuGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 18229 0.69 0.687253
Target:  5'- cACGCacuauuagaaaAGCgcgCGCGGCcgACCGgcGACCGCg -3'
miRNA:   3'- uUGCG-----------UCGa--GUGCCG--UGGCa-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 64818 0.69 0.697061
Target:  5'- gGACgGCGGCgagC-CGGCGCCGacGACCGg -3'
miRNA:   3'- -UUG-CGUCGa--GuGCCGUGGCa-CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 93993 0.69 0.697061
Target:  5'- cGGCGCGGacgC-CGGCGCCGgcggcgGGCCGg -3'
miRNA:   3'- -UUGCGUCga-GuGCCGUGGCa-----CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 59307 0.69 0.697061
Target:  5'- cGCGCAGCgcCACGGCGcgcCCGacuucGCCGCc -3'
miRNA:   3'- uUGCGUCGa-GUGCCGU---GGCac---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.