miRNA display CGI


Results 21 - 40 of 261 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 14631 0.66 0.856749
Target:  5'- aGACGgGGCcgggCACGGagaCGCCGgcGCCGCg -3'
miRNA:   3'- -UUGCgUCGa---GUGCC---GUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 129158 0.66 0.856749
Target:  5'- -uCGCGGCccUCGCGGCcgaugGCCGUucGAUCGg -3'
miRNA:   3'- uuGCGUCG--AGUGCCG-----UGGCA--CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 34224 0.66 0.855995
Target:  5'- gAGCGCAaggugcaggagcuGCacgCGCGGCuGCCGccgcaggcgGACCGCg -3'
miRNA:   3'- -UUGCGU-------------CGa--GUGCCG-UGGCa--------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 147322 0.66 0.849126
Target:  5'- -gUGCGGCUCuuCGGgGCCGaucucgUGcGCCGCu -3'
miRNA:   3'- uuGCGUCGAGu-GCCgUGGC------AC-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 90187 0.66 0.849126
Target:  5'- gGACGC-GCg-GgGGCACgGUGcCCGCg -3'
miRNA:   3'- -UUGCGuCGagUgCCGUGgCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 43234 0.66 0.849126
Target:  5'- uGCGCuGCa-GCGGCACCGgccgGAaCGCc -3'
miRNA:   3'- uUGCGuCGagUGCCGUGGCa---CUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 20967 0.66 0.849126
Target:  5'- uGGCaaCAGCUCAcCGGCAgCGgcggcggcagcGACCGCg -3'
miRNA:   3'- -UUGc-GUCGAGU-GCCGUgGCa----------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 66844 0.66 0.849126
Target:  5'- gGGCGCcGC-CGuCGGCGCgGcgaGGCCGCg -3'
miRNA:   3'- -UUGCGuCGaGU-GCCGUGgCa--CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 182812 0.66 0.849126
Target:  5'- -uCGaCAGCUCguccagccGCGGCACCGacacGACCa- -3'
miRNA:   3'- uuGC-GUCGAG--------UGCCGUGGCa---CUGGcg -5'
11129 3' -58.6 NC_002794.1 + 68320 0.66 0.849126
Target:  5'- cGACGC-GUUcCGCGGCcUgGUGACCGg -3'
miRNA:   3'- -UUGCGuCGA-GUGCCGuGgCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 190990 0.66 0.849126
Target:  5'- cAGCGCGGCg-ACGGCGUCGcgaucGGCCGUu -3'
miRNA:   3'- -UUGCGUCGagUGCCGUGGCa----CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 31319 0.66 0.849126
Target:  5'- gAGCGUgAGuCUCGuCGGCucggcgcccGCCGUGuCCGCc -3'
miRNA:   3'- -UUGCG-UC-GAGU-GCCG---------UGGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 142466 0.66 0.849126
Target:  5'- cGAUG-AGCgC-CGGCACCGUGGaCGCg -3'
miRNA:   3'- -UUGCgUCGaGuGCCGUGGCACUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 46393 0.66 0.841317
Target:  5'- cGACG-AGCUgaaACGGCACCGgGAagCGCg -3'
miRNA:   3'- -UUGCgUCGAg--UGCCGUGGCaCUg-GCG- -5'
11129 3' -58.6 NC_002794.1 + 89695 0.66 0.841317
Target:  5'- -uCGCGGCgaauauaaACGGCGCCGcgGugccgauCCGCg -3'
miRNA:   3'- uuGCGUCGag------UGCCGUGGCa-Cu------GGCG- -5'
11129 3' -58.6 NC_002794.1 + 180760 0.66 0.841317
Target:  5'- --gGCGGCUUcgGCGGCaacuguccggGCgGUGGCCGg -3'
miRNA:   3'- uugCGUCGAG--UGCCG----------UGgCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 19258 0.66 0.841317
Target:  5'- cGAC-CGGC-CGCGGCccCCGUGGCgCGUc -3'
miRNA:   3'- -UUGcGUCGaGUGCCGu-GGCACUG-GCG- -5'
11129 3' -58.6 NC_002794.1 + 105907 0.66 0.841317
Target:  5'- -cCGCGGCg-GCGGCgcuACCGccGCCGCc -3'
miRNA:   3'- uuGCGUCGagUGCCG---UGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 99279 0.66 0.841317
Target:  5'- cGGCGC-GCUCcCgGGCucuuCCGcGACCGCc -3'
miRNA:   3'- -UUGCGuCGAGuG-CCGu---GGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 184947 0.66 0.841317
Target:  5'- -cCGCAGCUgCGcCGGC-CCGcGcaGCCGCu -3'
miRNA:   3'- uuGCGUCGA-GU-GCCGuGGCaC--UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.