miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 184947 0.66 0.841317
Target:  5'- -cCGCAGCUgCGcCGGC-CCGcGcaGCCGCu -3'
miRNA:   3'- uuGCGUCGA-GU-GCCGuGGCaC--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 114347 0.66 0.838939
Target:  5'- --aGCGGCUCGuccgccgccagggcCGGCugCaG-GGCCGCg -3'
miRNA:   3'- uugCGUCGAGU--------------GCCGugG-CaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 104891 0.66 0.838939
Target:  5'- gGGC-CGGC-CGCgaGGCGCCGUGcugcucgagcaggcGCCGCg -3'
miRNA:   3'- -UUGcGUCGaGUG--CCGUGGCAC--------------UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 81937 0.66 0.836544
Target:  5'- aGACGguGCacaucuccugcgccaUCGCGGCGCCc-GcCCGCu -3'
miRNA:   3'- -UUGCguCG---------------AGUGCCGUGGcaCuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 70250 0.66 0.833328
Target:  5'- -cCGCAGCagACGcGCAgCGacggaGGCCGCg -3'
miRNA:   3'- uuGCGUCGagUGC-CGUgGCa----CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 50584 0.66 0.833328
Target:  5'- uGCGCGGCggcuggguggC-CGGCGCCGggggGAUCGa -3'
miRNA:   3'- uUGCGUCGa---------GuGCCGUGGCa---CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 39678 0.66 0.833328
Target:  5'- cGCGCGGUgcgcuucuucgUCGCccGGCACCGccggcgcuaccGACCGCu -3'
miRNA:   3'- uUGCGUCG-----------AGUG--CCGUGGCa----------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 146498 0.66 0.833328
Target:  5'- -cCGUcgAGCUCGCGGaGCCccugcucggGACCGCg -3'
miRNA:   3'- uuGCG--UCGAGUGCCgUGGca-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 130548 0.66 0.833328
Target:  5'- cGACGCGGCgUCGCcGCGCaCGUGuUgGCg -3'
miRNA:   3'- -UUGCGUCG-AGUGcCGUG-GCACuGgCG- -5'
11129 3' -58.6 NC_002794.1 + 75464 0.66 0.833328
Target:  5'- cGGCGCcccGUacCACGGCGCCGaGACgGCc -3'
miRNA:   3'- -UUGCGu--CGa-GUGCCGUGGCaCUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 71358 0.66 0.833328
Target:  5'- cGGCGCAGCaggUGCGGCAgCCGccccagGACCu- -3'
miRNA:   3'- -UUGCGUCGa--GUGCCGU-GGCa-----CUGGcg -5'
11129 3' -58.6 NC_002794.1 + 131387 0.66 0.833328
Target:  5'- cGGCGCcGCgcccgucaUCACGGCcucgcCCGUGAUCGg -3'
miRNA:   3'- -UUGCGuCG--------AGUGCCGu----GGCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 188590 0.66 0.833328
Target:  5'- -cCGCcGCUcCACGGcCGCCuUGcGCCGCa -3'
miRNA:   3'- uuGCGuCGA-GUGCC-GUGGcAC-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 184986 0.66 0.833328
Target:  5'- cACGCAGCgCGCGaaGCgGcGGCCGCc -3'
miRNA:   3'- uUGCGUCGaGUGCcgUGgCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 90109 0.66 0.832519
Target:  5'- -cCGCGGUg---GGCGCCGUGAgucuguaCCGCu -3'
miRNA:   3'- uuGCGUCGagugCCGUGGCACU-------GGCG- -5'
11129 3' -58.6 NC_002794.1 + 113013 0.66 0.832519
Target:  5'- gAGCGCAGCUugccguucugCGCGGCGcauucauCCGUcaGGCgCGCc -3'
miRNA:   3'- -UUGCGUCGA----------GUGCCGU-------GGCA--CUG-GCG- -5'
11129 3' -58.6 NC_002794.1 + 105207 0.66 0.832519
Target:  5'- gGACGCGGUgaUCAgGGUcgacaggGCCGUGcGCgGCg -3'
miRNA:   3'- -UUGCGUCG--AGUgCCG-------UGGCAC-UGgCG- -5'
11129 3' -58.6 NC_002794.1 + 142963 0.66 0.825166
Target:  5'- cGGCGUcgAGCUCcucgucgaGgGGCugCGUGcCCGCc -3'
miRNA:   3'- -UUGCG--UCGAG--------UgCCGugGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 177975 0.66 0.825166
Target:  5'- gGACGguuggaGGCUCGCGGCAuCCGUcugguuCCGUc -3'
miRNA:   3'- -UUGCg-----UCGAGUGCCGU-GGCAcu----GGCG- -5'
11129 3' -58.6 NC_002794.1 + 119717 0.66 0.825166
Target:  5'- cAACgGCGGCUU-CGGCACCG-GG-CGCu -3'
miRNA:   3'- -UUG-CGUCGAGuGCCGUGGCaCUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.