Results 61 - 80 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11129 | 3' | -58.6 | NC_002794.1 | + | 177975 | 0.66 | 0.825166 |
Target: 5'- gGACGguuggaGGCUCGCGGCAuCCGUcugguuCCGUc -3' miRNA: 3'- -UUGCg-----UCGAGUGCCGU-GGCAcu----GGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 144769 | 0.66 | 0.825166 |
Target: 5'- gAACGCAGCUgGcCGGCgucGCCGcUGGCUu- -3' miRNA: 3'- -UUGCGUCGAgU-GCCG---UGGC-ACUGGcg -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 62891 | 0.67 | 0.820188 |
Target: 5'- uGACGCcccagaaccccuaccAGCUcCGCGuGUACCGUaagcacuacGGCCGCu -3' miRNA: 3'- -UUGCG---------------UCGA-GUGC-CGUGGCA---------CUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 59174 | 0.67 | 0.816838 |
Target: 5'- uGGCGCAGCUgCugGaCcCCGUGGCgGUc -3' miRNA: 3'- -UUGCGUCGA-GugCcGuGGCACUGgCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 14714 | 0.67 | 0.816838 |
Target: 5'- gAGCGCuGCUCGCGGCuuCGgcucggGGuCCGg -3' miRNA: 3'- -UUGCGuCGAGUGCCGugGCa-----CU-GGCg -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 66707 | 0.67 | 0.816838 |
Target: 5'- uACGCcGCgcccggCACGGcCGCCGccACCGCc -3' miRNA: 3'- uUGCGuCGa-----GUGCC-GUGGCacUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 136326 | 0.67 | 0.816838 |
Target: 5'- -cCGCAGCUCuucuCGGUGgCG-GGCCaGCg -3' miRNA: 3'- uuGCGUCGAGu---GCCGUgGCaCUGG-CG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 151569 | 0.67 | 0.816838 |
Target: 5'- uGACGUAGCgccccccgGCGGCGCgCGccGCCGCc -3' miRNA: 3'- -UUGCGUCGag------UGCCGUG-GCacUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 11792 | 0.67 | 0.816838 |
Target: 5'- -cCGCGGUgucCGUGGCGCCGccGCCGCc -3' miRNA: 3'- uuGCGUCGa--GUGCCGUGGCacUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 194503 | 0.67 | 0.816838 |
Target: 5'- cGCGCccGGCcCGCGGCcCgCGUG-CCGCc -3' miRNA: 3'- uUGCG--UCGaGUGCCGuG-GCACuGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 45925 | 0.67 | 0.816838 |
Target: 5'- cGACGaGGCUCGCGcuucccCGCCcgGUGACCGUc -3' miRNA: 3'- -UUGCgUCGAGUGCc-----GUGG--CACUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 116845 | 0.67 | 0.816838 |
Target: 5'- cGCGCGGUggaUCuucauGCGGCgGCCGUG-UCGCg -3' miRNA: 3'- uUGCGUCG---AG-----UGCCG-UGGCACuGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 114486 | 0.67 | 0.816838 |
Target: 5'- cGCGUacccGGUcCACGcGCGCCG-GACCGUc -3' miRNA: 3'- uUGCG----UCGaGUGC-CGUGGCaCUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 192659 | 0.67 | 0.816838 |
Target: 5'- cGCGC-GCUCGCGcgacucgaaGCGCCG--GCCGCc -3' miRNA: 3'- uUGCGuCGAGUGC---------CGUGGCacUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 21370 | 0.67 | 0.813462 |
Target: 5'- aGACGCGGCg-GCGGcCGCCGUcucuuccucggacACCGCc -3' miRNA: 3'- -UUGCGUCGagUGCC-GUGGCAc------------UGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 123332 | 0.67 | 0.809207 |
Target: 5'- -cCGCAGCUggggguggcguuccaACGGUACCG--GCCGCu -3' miRNA: 3'- uuGCGUCGAg--------------UGCCGUGGCacUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 111318 | 0.67 | 0.808351 |
Target: 5'- aGACGCcgGGCcaGCGGCGCg--GGCCGCa -3' miRNA: 3'- -UUGCG--UCGagUGCCGUGgcaCUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 61551 | 0.67 | 0.808351 |
Target: 5'- cGACGCcGC-CGCGGCGgCG--GCCGCc -3' miRNA: 3'- -UUGCGuCGaGUGCCGUgGCacUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 70666 | 0.67 | 0.808351 |
Target: 5'- uGCGCGGCggccgcCGCGGCGgugacgucCUGUcGCCGCu -3' miRNA: 3'- uUGCGUCGa-----GUGCCGU--------GGCAcUGGCG- -5' |
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11129 | 3' | -58.6 | NC_002794.1 | + | 126382 | 0.67 | 0.808351 |
Target: 5'- gGGCGCcggGGCcugCGCGGCGgCGUGcGCgGCg -3' miRNA: 3'- -UUGCG---UCGa--GUGCCGUgGCAC-UGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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