miRNA display CGI


Results 1 - 20 of 261 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 774 0.66 0.825166
Target:  5'- cGCGguGCauuuggCACGGUgccaACCGUG-CCGUc -3'
miRNA:   3'- uUGCguCGa-----GUGCCG----UGGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 10324 0.68 0.745166
Target:  5'- cGACuCGGCcgUCGuCGGCGCCGcGACCGg -3'
miRNA:   3'- -UUGcGUCG--AGU-GCCGUGGCaCUGGCg -5'
11129 3' -58.6 NC_002794.1 + 11792 0.67 0.816838
Target:  5'- -cCGCGGUgucCGUGGCGCCGccGCCGCc -3'
miRNA:   3'- uuGCGUCGa--GUGCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 11921 0.67 0.799714
Target:  5'- uGACGaCGGC-CACGGUgAUCGcGAUCGCg -3'
miRNA:   3'- -UUGC-GUCGaGUGCCG-UGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 12229 0.7 0.637721
Target:  5'- --gGCGGCgccgGCGGCGCCGU--CCGCg -3'
miRNA:   3'- uugCGUCGag--UGCCGUGGCAcuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 12542 0.73 0.464207
Target:  5'- gAACGCGGCgcgCACGGCuACCGgcgcAUCGCc -3'
miRNA:   3'- -UUGCGUCGa--GUGCCG-UGGCac--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 13129 0.69 0.686269
Target:  5'- cGCGCGGCUCGCucgcgcgGGUcgucGCCGUcccauGCCGCa -3'
miRNA:   3'- uUGCGUCGAGUG-------CCG----UGGCAc----UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 14190 0.72 0.519989
Target:  5'- aGACGuCAGCgUCcCGGC-CCGcUGGCCGCc -3'
miRNA:   3'- -UUGC-GUCG-AGuGCCGuGGC-ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 14507 0.79 0.225558
Target:  5'- -cCGC-GCUCGCGGCGCuCGUGgcGCCGCu -3'
miRNA:   3'- uuGCGuCGAGUGCCGUG-GCAC--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 14631 0.66 0.856749
Target:  5'- aGACGgGGCcgggCACGGagaCGCCGgcGCCGCg -3'
miRNA:   3'- -UUGCgUCGa---GUGCC---GUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 14714 0.67 0.816838
Target:  5'- gAGCGCuGCUCGCGGCuuCGgcucggGGuCCGg -3'
miRNA:   3'- -UUGCGuCGAGUGCCGugGCa-----CU-GGCg -5'
11129 3' -58.6 NC_002794.1 + 18229 0.69 0.687253
Target:  5'- cACGCacuauuagaaaAGCgcgCGCGGCcgACCGgcGACCGCg -3'
miRNA:   3'- uUGCG-----------UCGa--GUGCCG--UGGCa-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 18537 0.72 0.510496
Target:  5'- gAACGCgAGCacgagCACGGCggcgaccgcgACCGUGcCCGCg -3'
miRNA:   3'- -UUGCG-UCGa----GUGCCG----------UGGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 18635 0.67 0.790934
Target:  5'- cGACGCccGCUCcgcCGGCACCcGggacGACCGUc -3'
miRNA:   3'- -UUGCGu-CGAGu--GCCGUGG-Ca---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 19070 0.74 0.386878
Target:  5'- -cUGCGG-UCACGGUGCCGUGAgCUGCg -3'
miRNA:   3'- uuGCGUCgAGUGCCGUGGCACU-GGCG- -5'
11129 3' -58.6 NC_002794.1 + 19258 0.66 0.841317
Target:  5'- cGAC-CGGC-CGCGGCccCCGUGGCgCGUc -3'
miRNA:   3'- -UUGcGUCGaGUGCCGu-GGCACUG-GCG- -5'
11129 3' -58.6 NC_002794.1 + 19526 0.67 0.806636
Target:  5'- gAGCGcCGGCgcggCGCGGCccGCCGgugucggacccgGACUGCu -3'
miRNA:   3'- -UUGC-GUCGa---GUGCCG--UGGCa-----------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 20967 0.66 0.849126
Target:  5'- uGGCaaCAGCUCAcCGGCAgCGgcggcggcagcGACCGCg -3'
miRNA:   3'- -UUGc-GUCGAGU-GCCGUgGCa----------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 21370 0.67 0.813462
Target:  5'- aGACGCGGCg-GCGGcCGCCGUcucuuccucggacACCGCc -3'
miRNA:   3'- -UUGCGUCGagUGCC-GUGGCAc------------UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 21451 0.71 0.568384
Target:  5'- cGCGUcGCUCgGCGuCGCCGUGACgGCa -3'
miRNA:   3'- uUGCGuCGAG-UGCcGUGGCACUGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.