miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 21928 0.73 0.437507
Target:  5'- cGACgGCGGCggCGCGGCgcucgucgaagGCCGUcGGCCGCu -3'
miRNA:   3'- -UUG-CGUCGa-GUGCCG-----------UGGCA-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 22628 0.67 0.782018
Target:  5'- --gGCcGCUCGaGGCGCuCG-GACCGCu -3'
miRNA:   3'- uugCGuCGAGUgCCGUG-GCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 23851 0.66 0.864181
Target:  5'- uGACGCAacgGCgcgCACcgGGCuucaaACCG-GACCGCg -3'
miRNA:   3'- -UUGCGU---CGa--GUG--CCG-----UGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 24174 0.66 0.841317
Target:  5'- uAAC-CGGCcucgacccCGCGGCACCGaGACCGa -3'
miRNA:   3'- -UUGcGUCGa-------GUGCCGUGGCaCUGGCg -5'
11129 3' -58.6 NC_002794.1 + 31319 0.66 0.849126
Target:  5'- gAGCGUgAGuCUCGuCGGCucggcgcccGCCGUGuCCGCc -3'
miRNA:   3'- -UUGCG-UC-GAGU-GCCG---------UGGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 32298 0.68 0.754541
Target:  5'- -cCGCcGC-CGCGGCgGCCGcgccGGCCGCg -3'
miRNA:   3'- uuGCGuCGaGUGCCG-UGGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 32579 0.68 0.726146
Target:  5'- cGCGCGGCggugC-CGGgGCCGgGGCCGg -3'
miRNA:   3'- uUGCGUCGa---GuGCCgUGGCaCUGGCg -5'
11129 3' -58.6 NC_002794.1 + 33304 0.72 0.52955
Target:  5'- -cUGCGGCUCugGGCGgCGUccauCCGCc -3'
miRNA:   3'- uuGCGUCGAGugCCGUgGCAcu--GGCG- -5'
11129 3' -58.6 NC_002794.1 + 34093 0.7 0.637721
Target:  5'- --gGCAGCcgUCggGCGGC-CCG-GACCGCg -3'
miRNA:   3'- uugCGUCG--AG--UGCCGuGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 34224 0.66 0.855995
Target:  5'- gAGCGCAaggugcaggagcuGCacgCGCGGCuGCCGccgcaggcgGACCGCg -3'
miRNA:   3'- -UUGCGU-------------CGa--GUGCCG-UGGCa--------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 34756 0.69 0.667514
Target:  5'- cGGCGCGGUgggaCGCGGCACgGccGcCCGCg -3'
miRNA:   3'- -UUGCGUCGa---GUGCCGUGgCa-CuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 35742 0.68 0.754541
Target:  5'- cGCGCgucucacuGGCuguccaacgacgUCGCGGCACCGUcGCCGg -3'
miRNA:   3'- uUGCG--------UCG------------AGUGCCGUGGCAcUGGCg -5'
11129 3' -58.6 NC_002794.1 + 36006 0.68 0.733795
Target:  5'- cGCGgGGCUCggGCGGCggaauccGCCGUccggcccGGCCGCc -3'
miRNA:   3'- uUGCgUCGAG--UGCCG-------UGGCA-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 36200 0.67 0.782018
Target:  5'- uGACGUGGCaCACGGcCACCagcagGUaGCCGCa -3'
miRNA:   3'- -UUGCGUCGaGUGCC-GUGG-----CAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 36348 0.69 0.706818
Target:  5'- cAACcCGGCgugCGCGGcCACCGgGugCGCg -3'
miRNA:   3'- -UUGcGUCGa--GUGCC-GUGGCaCugGCG- -5'
11129 3' -58.6 NC_002794.1 + 36900 0.77 0.284659
Target:  5'- gAGCGUccagAGgUCGCGGCGCCGgccccgcGACCGCg -3'
miRNA:   3'- -UUGCG----UCgAGUGCCGUGGCa------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 37754 0.69 0.675426
Target:  5'- cGGCGCGGCggCGcCGGCgggagcgGCCGUcgucgucGGCCGCa -3'
miRNA:   3'- -UUGCGUCGa-GU-GCCG-------UGGCA-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 37908 0.72 0.519036
Target:  5'- --aGCGGCUCGcCGGCcucaacgucaaccGCCGcGGCCGCc -3'
miRNA:   3'- uugCGUCGAGU-GCCG-------------UGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 38495 0.67 0.799714
Target:  5'- aAGCGCGGC----GGCGCCGgucGCCGCc -3'
miRNA:   3'- -UUGCGUCGagugCCGUGGCac-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 39678 0.66 0.833328
Target:  5'- cGCGCGGUgcgcuucuucgUCGCccGGCACCGccggcgcuaccGACCGCu -3'
miRNA:   3'- uUGCGUCG-----------AGUG--CCGUGGCa----------CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.