miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 53074 0.8 0.195331
Target:  5'- cGCGCcgccAGCUCGCGGCACCG-GGCCa- -3'
miRNA:   3'- uUGCG----UCGAGUGCCGUGGCaCUGGcg -5'
11129 3' -58.6 NC_002794.1 + 53537 0.66 0.864181
Target:  5'- gGGCGCGGCggccgCACaGC-CCGUGGaCGUa -3'
miRNA:   3'- -UUGCGUCGa----GUGcCGuGGCACUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 54252 0.74 0.395046
Target:  5'- cGCGCGGUcCACGGCGCCGcgucgGGCCa- -3'
miRNA:   3'- uUGCGUCGaGUGCCGUGGCa----CUGGcg -5'
11129 3' -58.6 NC_002794.1 + 55803 0.69 0.677401
Target:  5'- gAGCGCAGCgccgggCGCgGGCGCgCGcUGAUgGCg -3'
miRNA:   3'- -UUGCGUCGa-----GUG-CCGUG-GC-ACUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 56162 0.69 0.687253
Target:  5'- cAGCgGCAGCggccccggugCACGuagaGCACCG-GGCCGCg -3'
miRNA:   3'- -UUG-CGUCGa---------GUGC----CGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 56256 0.69 0.706818
Target:  5'- --aGCAGggCACGGcCACCG-GGCCGa -3'
miRNA:   3'- uugCGUCgaGUGCC-GUGGCaCUGGCg -5'
11129 3' -58.6 NC_002794.1 + 56305 0.75 0.37088
Target:  5'- cGCGCGG-UCGCGGUcgcuggcgGCCGUGGCCGg -3'
miRNA:   3'- uUGCGUCgAGUGCCG--------UGGCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 56907 0.73 0.473295
Target:  5'- cGCGUGGC-CACgGGCGCCG-GGCUGCc -3'
miRNA:   3'- uUGCGUCGaGUG-CCGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 57393 0.71 0.568384
Target:  5'- uACGUcaccGGCUC-CGGCGCCcgcGUGGCCGg -3'
miRNA:   3'- uUGCG----UCGAGuGCCGUGG---CACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 58435 0.7 0.647666
Target:  5'- aGACGCcgaGGC-CACGcuGCGCC-UGGCCGCg -3'
miRNA:   3'- -UUGCG---UCGaGUGC--CGUGGcACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 58856 0.75 0.37088
Target:  5'- -gUGCAGCUCGucgccgacCGGCAgCCGUGcgcGCCGCg -3'
miRNA:   3'- uuGCGUCGAGU--------GCCGU-GGCAC---UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 59174 0.67 0.816838
Target:  5'- uGGCGCAGCUgCugGaCcCCGUGGCgGUc -3'
miRNA:   3'- -UUGCGUCGA-GugCcGuGGCACUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 59307 0.69 0.697061
Target:  5'- cGCGCAGCgcCACGGCGcgcCCGacuucGCCGCc -3'
miRNA:   3'- uUGCGUCGa-GUGCCGU---GGCac---UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 59995 0.68 0.726146
Target:  5'- uGCGcCAGUUCAcCGGCGCCGagcgcaccGACCuGCu -3'
miRNA:   3'- uUGC-GUCGAGU-GCCGUGGCa-------CUGG-CG- -5'
11129 3' -58.6 NC_002794.1 + 60048 0.69 0.697061
Target:  5'- -uCGCuGCUCACcuucggccgccGCACCGUGccGCCGCc -3'
miRNA:   3'- uuGCGuCGAGUGc----------CGUGGCAC--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 60701 0.68 0.763813
Target:  5'- cGCGCA-CUUugGGCACUaccUGAUCGCc -3'
miRNA:   3'- uUGCGUcGAGugCCGUGGc--ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 60868 0.67 0.798842
Target:  5'- cGGC-CGGCUCucaaguacauCGGCGCCGUGGuccccaucccguuCCGCc -3'
miRNA:   3'- -UUGcGUCGAGu---------GCCGUGGCACU-------------GGCG- -5'
11129 3' -58.6 NC_002794.1 + 61551 0.67 0.808351
Target:  5'- cGACGCcGC-CGCGGCGgCG--GCCGCc -3'
miRNA:   3'- -UUGCGuCGaGUGCCGUgGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 62891 0.67 0.820188
Target:  5'- uGACGCcccagaaccccuaccAGCUcCGCGuGUACCGUaagcacuacGGCCGCu -3'
miRNA:   3'- -UUGCG---------------UCGA-GUGC-CGUGGCA---------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 63703 0.74 0.395046
Target:  5'- cGACGaCGGCgC-CGGCGCCGccgGACCGCc -3'
miRNA:   3'- -UUGC-GUCGaGuGCCGUGGCa--CUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.