miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 185064 0.69 0.667514
Target:  5'- -cUGCAGCcgcCGCGGC-CCGUcGCCGUa -3'
miRNA:   3'- uuGCGUCGa--GUGCCGuGGCAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 184986 0.66 0.833328
Target:  5'- cACGCAGCgCGCGaaGCgGcGGCCGCc -3'
miRNA:   3'- uUGCGUCGaGUGCcgUGgCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 184947 0.66 0.841317
Target:  5'- -cCGCAGCUgCGcCGGC-CCGcGcaGCCGCu -3'
miRNA:   3'- uuGCGUCGA-GU-GCCGuGGCaC--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 184596 0.68 0.763813
Target:  5'- cGCGCGGC-CGCGGgAUCGgcaacGGCCaGCg -3'
miRNA:   3'- uUGCGUCGaGUGCCgUGGCa----CUGG-CG- -5'
11129 3' -58.6 NC_002794.1 + 184114 0.68 0.754541
Target:  5'- cAGCGCcccGCUCGcCGGCGuCaCGUaGACCGUg -3'
miRNA:   3'- -UUGCGu--CGAGU-GCCGU-G-GCA-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 184041 0.72 0.491733
Target:  5'- cGCGCAGCgCGCGGUcgCG-GGCCGCg -3'
miRNA:   3'- uUGCGUCGaGUGCCGugGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 183142 0.74 0.411711
Target:  5'- cGCGCAGCUcCGCGGaCACgCGgccgGGCUGCc -3'
miRNA:   3'- uUGCGUCGA-GUGCC-GUG-GCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 182812 0.66 0.849126
Target:  5'- -uCGaCAGCUCguccagccGCGGCACCGacacGACCa- -3'
miRNA:   3'- uuGC-GUCGAG--------UGCCGUGGCa---CUGGcg -5'
11129 3' -58.6 NC_002794.1 + 182536 0.68 0.725186
Target:  5'- cAGCGCGGCagCGacugcgccgcggcCGGCACCGUcACCGg -3'
miRNA:   3'- -UUGCGUCGa-GU-------------GCCGUGGCAcUGGCg -5'
11129 3' -58.6 NC_002794.1 + 180914 0.69 0.700971
Target:  5'- -cCGCGGuCUCGcCGGCGCCGUcGGaggucggucucgcguCCGCg -3'
miRNA:   3'- uuGCGUC-GAGU-GCCGUGGCA-CU---------------GGCG- -5'
11129 3' -58.6 NC_002794.1 + 180760 0.66 0.841317
Target:  5'- --gGCGGCUUcgGCGGCaacuguccggGCgGUGGCCGg -3'
miRNA:   3'- uugCGUCGAG--UGCCG----------UGgCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 180080 0.67 0.772975
Target:  5'- --aGCGGCggACGGUAUCG-GugCGCa -3'
miRNA:   3'- uugCGUCGagUGCCGUGGCaCugGCG- -5'
11129 3' -58.6 NC_002794.1 + 179962 0.69 0.667514
Target:  5'- gAGCGaCAGCaggaGCGGCaggagccaagGCgGUGGCCGCg -3'
miRNA:   3'- -UUGC-GUCGag--UGCCG----------UGgCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 177975 0.66 0.825166
Target:  5'- gGACGguuggaGGCUCGCGGCAuCCGUcugguuCCGUc -3'
miRNA:   3'- -UUGCg-----UCGAGUGCCGU-GGCAcu----GGCG- -5'
11129 3' -58.6 NC_002794.1 + 177566 0.66 0.856749
Target:  5'- gGACG-AGCuUCGCGaCGCCGUGACuCGa -3'
miRNA:   3'- -UUGCgUCG-AGUGCcGUGGCACUG-GCg -5'
11129 3' -58.6 NC_002794.1 + 176285 0.69 0.706818
Target:  5'- aAugGCAGCg-AUGGCGCCGcGAguUCGCg -3'
miRNA:   3'- -UugCGUCGagUGCCGUGGCaCU--GGCG- -5'
11129 3' -58.6 NC_002794.1 + 172453 0.7 0.636726
Target:  5'- uGGCGaccugaaCAGgUaACGGuCACCGUGACCGCu -3'
miRNA:   3'- -UUGC-------GUCgAgUGCC-GUGGCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 157663 0.67 0.782018
Target:  5'- cGACGC-GCUgGCGGC-UUG-GGCCGCu -3'
miRNA:   3'- -UUGCGuCGAgUGCCGuGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 156485 0.69 0.687253
Target:  5'- cGGgGCGGCUUuaccgguuuaGCGGC-CCGuUGAUCGCg -3'
miRNA:   3'- -UUgCGUCGAG----------UGCCGuGGC-ACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 156400 0.71 0.54886
Target:  5'- --aGCGGC---CGGCGCCGcGGCCGCg -3'
miRNA:   3'- uugCGUCGaguGCCGUGGCaCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.