miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 154472 0.66 0.856749
Target:  5'- aGGCGCugcaAGCUUACGGCauGCUuUGAacCCGCu -3'
miRNA:   3'- -UUGCG----UCGAGUGCCG--UGGcACU--GGCG- -5'
11129 3' -58.6 NC_002794.1 + 152232 0.68 0.754541
Target:  5'- cGCGC-GCcacgUCGCGcGCACCGUcGCCGUc -3'
miRNA:   3'- uUGCGuCG----AGUGC-CGUGGCAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 151569 0.67 0.816838
Target:  5'- uGACGUAGCgccccccgGCGGCGCgCGccGCCGCc -3'
miRNA:   3'- -UUGCGUCGag------UGCCGUG-GCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 150533 0.67 0.772975
Target:  5'- -cCGUAGCcgggC-CGGCGCCaUGGCCGUc -3'
miRNA:   3'- uuGCGUCGa---GuGCCGUGGcACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 150396 0.7 0.647666
Target:  5'- gGGCGCccuGgUUGCGGCagaaGCCGUGGcCCGCg -3'
miRNA:   3'- -UUGCGu--CgAGUGCCG----UGGCACU-GGCG- -5'
11129 3' -58.6 NC_002794.1 + 147701 0.72 0.519989
Target:  5'- cGAUGCGGCgCACGuGCGCCaGU-ACCGCg -3'
miRNA:   3'- -UUGCGUCGaGUGC-CGUGG-CAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 147322 0.66 0.849126
Target:  5'- -gUGCGGCUCuuCGGgGCCGaucucgUGcGCCGCu -3'
miRNA:   3'- uuGCGUCGAGu-GCCgUGGC------AC-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 147132 0.72 0.501076
Target:  5'- cGACgGCGGUUCgagACGGCcCCGgGGCCGCg -3'
miRNA:   3'- -UUG-CGUCGAG---UGCCGuGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 146498 0.66 0.833328
Target:  5'- -cCGUcgAGCUCGCGGaGCCccugcucggGACCGCg -3'
miRNA:   3'- uuGCG--UCGAGUGCCgUGGca-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 145834 0.66 0.861972
Target:  5'- gAGCGCGucgacggucgccacGCUCgACGaGcCGCCGagGGCCGCg -3'
miRNA:   3'- -UUGCGU--------------CGAG-UGC-C-GUGGCa-CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 145728 0.68 0.754541
Target:  5'- gGGCGCuggaGGCg-GCGGCGCCGgcaucGACgGCg -3'
miRNA:   3'- -UUGCG----UCGagUGCCGUGGCa----CUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 145322 0.7 0.637721
Target:  5'- cGCGCGGCggGCGGCGCuCG-GGCCcgaGCg -3'
miRNA:   3'- uUGCGUCGagUGCCGUG-GCaCUGG---CG- -5'
11129 3' -58.6 NC_002794.1 + 144769 0.66 0.825166
Target:  5'- gAACGCAGCUgGcCGGCgucGCCGcUGGCUu- -3'
miRNA:   3'- -UUGCGUCGAgU-GCCG---UGGC-ACUGGcg -5'
11129 3' -58.6 NC_002794.1 + 144035 0.68 0.726146
Target:  5'- -cCGUAuCUC-CGGCGCC-UGGCCGCc -3'
miRNA:   3'- uuGCGUcGAGuGCCGUGGcACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 143544 0.71 0.54886
Target:  5'- aGGCGCGGCacgagCACGGUggcccaGCCGUGcgcGCCGUc -3'
miRNA:   3'- -UUGCGUCGa----GUGCCG------UGGCAC---UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 142963 0.66 0.825166
Target:  5'- cGGCGUcgAGCUCcucgucgaGgGGCugCGUGcCCGCc -3'
miRNA:   3'- -UUGCG--UCGAG--------UgCCGugGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 142466 0.66 0.849126
Target:  5'- cGAUG-AGCgC-CGGCACCGUGGaCGCg -3'
miRNA:   3'- -UUGCgUCGaGuGCCGUGGCACUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 142407 0.66 0.864181
Target:  5'- --gGCGGCgUCgGCGGCGCCG-GG-CGCg -3'
miRNA:   3'- uugCGUCG-AG-UGCCGUGGCaCUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 142066 0.68 0.763813
Target:  5'- -gUGCgGGCUCcuCGGUcaaACCGUGGCCGg -3'
miRNA:   3'- uuGCG-UCGAGu-GCCG---UGGCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 141617 0.74 0.426214
Target:  5'- cGAC-CGGCUCGCGGUcuagcgacgggaagGCCGgcgUGGCCGCg -3'
miRNA:   3'- -UUGcGUCGAGUGCCG--------------UGGC---ACUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.