miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 141566 0.73 0.482471
Target:  5'- -cCGCGGC-CGCGGCcuCCGUGAucaugacgcCCGCg -3'
miRNA:   3'- uuGCGUCGaGUGCCGu-GGCACU---------GGCG- -5'
11129 3' -58.6 NC_002794.1 + 141459 0.68 0.762891
Target:  5'- cGGCGCGGCgUCcggacugGCGaGCAUCGUGccgauCCGCa -3'
miRNA:   3'- -UUGCGUCG-AG-------UGC-CGUGGCACu----GGCG- -5'
11129 3' -58.6 NC_002794.1 + 138596 0.68 0.716516
Target:  5'- cGGCGCGGCggagaGCGGCuuUGUGAgUCGCg -3'
miRNA:   3'- -UUGCGUCGag---UGCCGugGCACU-GGCG- -5'
11129 3' -58.6 NC_002794.1 + 137389 0.68 0.748928
Target:  5'- cGACGCggguccggucuguccGGCgucCGCGGaCGCCGcggaGACCGCg -3'
miRNA:   3'- -UUGCG---------------UCGa--GUGCC-GUGGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 136326 0.67 0.816838
Target:  5'- -cCGCAGCUCuucuCGGUGgCG-GGCCaGCg -3'
miRNA:   3'- uuGCGUCGAGu---GCCGUgGCaCUGG-CG- -5'
11129 3' -58.6 NC_002794.1 + 134131 0.74 0.390132
Target:  5'- cGGCGCGGCgagCGCGGaagcUcgguccguguugcugGCCGUGGCCGCg -3'
miRNA:   3'- -UUGCGUCGa--GUGCC----G---------------UGGCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 131387 0.66 0.833328
Target:  5'- cGGCGCcGCgcccgucaUCACGGCcucgcCCGUGAUCGg -3'
miRNA:   3'- -UUGCGuCG--------AGUGCCGu----GGCACUGGCg -5'
11129 3' -58.6 NC_002794.1 + 131170 0.67 0.799714
Target:  5'- cGGCGCccgucucgAGCcggagacagCACGGCGCCGgGGCgGCg -3'
miRNA:   3'- -UUGCG--------UCGa--------GUGCCGUGGCaCUGgCG- -5'
11129 3' -58.6 NC_002794.1 + 131004 0.68 0.763813
Target:  5'- uACGUccuGGCUCACGGguCgGUGGUCGUg -3'
miRNA:   3'- uUGCG---UCGAGUGCCguGgCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 130682 0.69 0.697061
Target:  5'- -cCGCGGcCUCGugggaGGCGCCGUGuCgGCa -3'
miRNA:   3'- uuGCGUC-GAGUg----CCGUGGCACuGgCG- -5'
11129 3' -58.6 NC_002794.1 + 130548 0.66 0.833328
Target:  5'- cGACGCGGCgUCGCcGCGCaCGUGuUgGCg -3'
miRNA:   3'- -UUGCGUCG-AGUGcCGUG-GCACuGgCG- -5'
11129 3' -58.6 NC_002794.1 + 129158 0.66 0.856749
Target:  5'- -uCGCGGCccUCGCGGCcgaugGCCGUucGAUCGg -3'
miRNA:   3'- uuGCGUCG--AGUGCCG-----UGGCA--CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 129074 0.67 0.799714
Target:  5'- -uCGCGGCUgGCGGCggACCGUccggugggugGACUGg -3'
miRNA:   3'- uuGCGUCGAgUGCCG--UGGCA----------CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 128991 0.68 0.726146
Target:  5'- gAGCGCucuAGCUCgGCGGUcgacccgcucACCGUcGCCGCc -3'
miRNA:   3'- -UUGCG---UCGAG-UGCCG----------UGGCAcUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 127720 0.71 0.558598
Target:  5'- cGAUGgGGCUCgcggACGGCACCGaacGGCCGg -3'
miRNA:   3'- -UUGCgUCGAG----UGCCGUGGCa--CUGGCg -5'
11129 3' -58.6 NC_002794.1 + 127337 0.71 0.566423
Target:  5'- gAGCGCcgcugccgagacGCUCGCGGCGgCGgcgcGGCCGCu -3'
miRNA:   3'- -UUGCGu-----------CGAGUGCCGUgGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 126382 0.67 0.808351
Target:  5'- gGGCGCcggGGCcugCGCGGCGgCGUGcGCgGCg -3'
miRNA:   3'- -UUGCG---UCGa--GUGCCGUgGCAC-UGgCG- -5'
11129 3' -58.6 NC_002794.1 + 126277 0.7 0.637721
Target:  5'- --gGCGGCgCugGGCuuGCUGUGcGCCGCg -3'
miRNA:   3'- uugCGUCGaGugCCG--UGGCAC-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 125926 0.72 0.539176
Target:  5'- cACGCuGCUCGuCGaGCAguuccUCGUGGCCGCc -3'
miRNA:   3'- uUGCGuCGAGU-GC-CGU-----GGCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 125335 0.68 0.716516
Target:  5'- gAGCGC-GC-CACGGCgcACCGgcaGCCGCu -3'
miRNA:   3'- -UUGCGuCGaGUGCCG--UGGCac-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.