miRNA display CGI


Results 81 - 100 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 3' -58.6 NC_002794.1 + 125164 0.68 0.753608
Target:  5'- -gUGCAGCUCAagaacuuccaccUGGCccugacgaacugcGCCGUGACCa- -3'
miRNA:   3'- uuGCGUCGAGU------------GCCG-------------UGGCACUGGcg -5'
11129 3' -58.6 NC_002794.1 + 124536 0.67 0.782018
Target:  5'- cGACGCuGGCgcuGCGGCugaaGCCGUacaaGGCCGCc -3'
miRNA:   3'- -UUGCG-UCGag-UGCCG----UGGCA----CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 124394 0.67 0.807494
Target:  5'- --gGCGGCgcgucgccggucgUCGgGGCGCCGUccGCCGCg -3'
miRNA:   3'- uugCGUCG-------------AGUgCCGUGGCAc-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 124017 0.66 0.856749
Target:  5'- --gGCGGC-CGCGGaagagACgGUGGCCGUc -3'
miRNA:   3'- uugCGUCGaGUGCCg----UGgCACUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 123332 0.67 0.809207
Target:  5'- -cCGCAGCUggggguggcguuccaACGGUACCG--GCCGCu -3'
miRNA:   3'- uuGCGUCGAg--------------UGCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 122198 0.77 0.284659
Target:  5'- cGACGCGGCgaaGCGGUGCCGgcGCCGCu -3'
miRNA:   3'- -UUGCGUCGag-UGCCGUGGCacUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 121397 0.75 0.37088
Target:  5'- -cCGCGGC---CGGCGCCGgGACCGCg -3'
miRNA:   3'- uuGCGUCGaguGCCGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 120076 0.73 0.455211
Target:  5'- cGACGCGGCggugGCGGCgacgACCGUGccgagcgcGCCGCg -3'
miRNA:   3'- -UUGCGUCGag--UGCCG----UGGCAC--------UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 119717 0.66 0.825166
Target:  5'- cAACgGCGGCUU-CGGCACCG-GG-CGCu -3'
miRNA:   3'- -UUG-CGUCGAGuGCCGUGGCaCUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 118639 0.72 0.52955
Target:  5'- uGCGcCAGCUCgGCGGCcagcucguCCGUGGgCGCg -3'
miRNA:   3'- uUGC-GUCGAG-UGCCGu-------GGCACUgGCG- -5'
11129 3' -58.6 NC_002794.1 + 118268 0.72 0.510496
Target:  5'- -cCGgGGCg-GCGGCGCCGgcgucgggGACCGCg -3'
miRNA:   3'- uuGCgUCGagUGCCGUGGCa-------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 116845 0.67 0.816838
Target:  5'- cGCGCGGUggaUCuucauGCGGCgGCCGUG-UCGCg -3'
miRNA:   3'- uUGCGUCG---AG-----UGCCG-UGGCACuGGCG- -5'
11129 3' -58.6 NC_002794.1 + 116225 0.69 0.706818
Target:  5'- cGCGCGGCUCGaguCGaugccCGCCGUGcGCCGUa -3'
miRNA:   3'- uUGCGUCGAGU---GCc----GUGGCAC-UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 115982 0.72 0.510496
Target:  5'- gGACGgGGa--GCGGCGCCGcggaGACCGCg -3'
miRNA:   3'- -UUGCgUCgagUGCCGUGGCa---CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 115927 0.67 0.799714
Target:  5'- uGGCGCGGCg-GCGG-GCCGgcccGCCGCg -3'
miRNA:   3'- -UUGCGUCGagUGCCgUGGCac--UGGCG- -5'
11129 3' -58.6 NC_002794.1 + 115570 0.68 0.739497
Target:  5'- --aGCAGCUCggcgaacgggacguaGCGGCugCGgucGACcCGCu -3'
miRNA:   3'- uugCGUCGAG---------------UGCCGugGCa--CUG-GCG- -5'
11129 3' -58.6 NC_002794.1 + 115320 0.68 0.726146
Target:  5'- -cCGCAcggucGC-CGCGGCGuCCG-GGCCGCu -3'
miRNA:   3'- uuGCGU-----CGaGUGCCGU-GGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 114655 0.7 0.637721
Target:  5'- -cCGguGCUguucgCGCGcGCGCCGguacucgGACCGCa -3'
miRNA:   3'- uuGCguCGA-----GUGC-CGUGGCa------CUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 114486 0.67 0.816838
Target:  5'- cGCGUacccGGUcCACGcGCGCCG-GACCGUc -3'
miRNA:   3'- uUGCG----UCGaGUGC-CGUGGCaCUGGCG- -5'
11129 3' -58.6 NC_002794.1 + 114347 0.66 0.838939
Target:  5'- --aGCGGCUCGuccgccgccagggcCGGCugCaG-GGCCGCg -3'
miRNA:   3'- uugCGUCGAGU--------------GCCGugG-CaCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.