miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 5' -52.6 NC_002794.1 + 186348 0.66 0.993241
Target:  5'- cGgcGGcGACGUgccCGAccagcCGCCGCCg -3'
miRNA:   3'- aCuuCCaCUGCAacaGCUu----GCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 84433 0.66 0.993241
Target:  5'- cGAcGGcGACG-UGcCGAACgagggccuGCCGCCg -3'
miRNA:   3'- aCUuCCaCUGCaACaGCUUG--------CGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 127313 0.66 0.993241
Target:  5'- cGAGGccGUcucgacGACGgaGaCGAGCGCCGCUg -3'
miRNA:   3'- aCUUC--CA------CUGCaaCaGCUUGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 41184 0.66 0.993241
Target:  5'- cGGAGGccgaGCGUcGUCGucacGGCGCUGCUg -3'
miRNA:   3'- aCUUCCac--UGCAaCAGC----UUGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 137389 0.66 0.993241
Target:  5'- cGAcgcGGGUccggucuguccGGCGUccgCGGACGCCGCg -3'
miRNA:   3'- aCU---UCCA-----------CUGCAacaGCUUGCGGCGg -5'
11129 5' -52.6 NC_002794.1 + 117439 0.66 0.993241
Target:  5'- cGAGGcGUuGCGgaUGUCGcggaaGACGCCGCg -3'
miRNA:   3'- aCUUC-CAcUGCa-ACAGC-----UUGCGGCGg -5'
11129 5' -52.6 NC_002794.1 + 108346 0.66 0.992356
Target:  5'- aGGAGGUGGCGgagcgGggagcggaggaggacCGGGCGCCGg- -3'
miRNA:   3'- aCUUCCACUGCaa---Ca--------------GCUUGCGGCgg -5'
11129 5' -52.6 NC_002794.1 + 94867 0.66 0.992252
Target:  5'- cUGGAGGUGACGUUuacGgagCGGAUcCgGCUg -3'
miRNA:   3'- -ACUUCCACUGCAA---Ca--GCUUGcGgCGG- -5'
11129 5' -52.6 NC_002794.1 + 21934 0.66 0.992252
Target:  5'- cGgcGGcgcGGCGcucGUCGAAgGCCGUCg -3'
miRNA:   3'- aCuuCCa--CUGCaa-CAGCUUgCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 152194 0.66 0.992252
Target:  5'- cUGAAcacGGUcGCGUUccgcccggaggcGUCGGACGUCGCg -3'
miRNA:   3'- -ACUU---CCAcUGCAA------------CAGCUUGCGGCGg -5'
11129 5' -52.6 NC_002794.1 + 138398 0.66 0.992252
Target:  5'- aGAAGGcGuCGagGUCGucGCcgGCCGCCg -3'
miRNA:   3'- aCUUCCaCuGCaaCAGCu-UG--CGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 151727 0.66 0.992252
Target:  5'- cGAAGG--ACGUcGUCG---GCCGCCg -3'
miRNA:   3'- aCUUCCacUGCAaCAGCuugCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 32641 0.66 0.991152
Target:  5'- gGggGGcGACGaccgGggCGAcgGCGCCGUCc -3'
miRNA:   3'- aCuuCCaCUGCaa--Ca-GCU--UGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 144877 0.66 0.991035
Target:  5'- cUGAcucGGGUG-CGggG-CGAgacgcucGCGCCGCUg -3'
miRNA:   3'- -ACU---UCCACuGCaaCaGCU-------UGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 94460 0.66 0.990678
Target:  5'- aGucGGUGGCGacGgcaacggcggcggCGGACGCgGCCg -3'
miRNA:   3'- aCuuCCACUGCaaCa------------GCUUGCGgCGG- -5'
11129 5' -52.6 NC_002794.1 + 189858 0.66 0.989932
Target:  5'- cGGAGccGuCGgcGUCGu-CGCCGCCg -3'
miRNA:   3'- aCUUCcaCuGCaaCAGCuuGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 182904 0.66 0.989932
Target:  5'- cUGAAGcG-GAUGUaGUCGAuguCGUCGCUc -3'
miRNA:   3'- -ACUUC-CaCUGCAaCAGCUu--GCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 53903 0.66 0.989932
Target:  5'- ---cGGcGGCGUccucgucgccGUCGGcgGCGCCGCCg -3'
miRNA:   3'- acuuCCaCUGCAa---------CAGCU--UGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 115969 0.66 0.989932
Target:  5'- gUGggGGggagcggGACGggGagCG-GCGCCGCg -3'
miRNA:   3'- -ACuuCCa------CUGCaaCa-GCuUGCGGCGg -5'
11129 5' -52.6 NC_002794.1 + 106992 0.66 0.989541
Target:  5'- cGgcGGUGGCGgcgcUGgccgacgCGAcggugcucaccgcgGCGCCGCUg -3'
miRNA:   3'- aCuuCCACUGCa---ACa------GCU--------------UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.