miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11129 5' -52.6 NC_002794.1 + 116269 0.66 0.988584
Target:  5'- cGAAGGcGGCGUcGUaguaGAACG-UGCCg -3'
miRNA:   3'- aCUUCCaCUGCAaCAg---CUUGCgGCGG- -5'
11129 5' -52.6 NC_002794.1 + 91139 0.66 0.988584
Target:  5'- aGGAGGcgcgGACGgugcUGcUGGGCGCCGUg -3'
miRNA:   3'- aCUUCCa---CUGCa---ACaGCUUGCGGCGg -5'
11129 5' -52.6 NC_002794.1 + 98945 0.67 0.987099
Target:  5'- gGAAGGggcuggGGCucgUGcUGGGCGCCGUCg -3'
miRNA:   3'- aCUUCCa-----CUGca-ACaGCUUGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 179689 0.67 0.987099
Target:  5'- cGAcGGUGGCGgcGgcgaCGGugGCgaCGCCg -3'
miRNA:   3'- aCUuCCACUGCaaCa---GCUugCG--GCGG- -5'
11129 5' -52.6 NC_002794.1 + 110251 0.67 0.987099
Target:  5'- cGGAGGUuucccgcgcGGCGUcG-CGAcgGCgGCCGCCg -3'
miRNA:   3'- aCUUCCA---------CUGCAaCaGCU--UG-CGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 107509 0.67 0.985471
Target:  5'- cGggGGUGcCG--GUCGA-CGCCgacgGCCg -3'
miRNA:   3'- aCuuCCACuGCaaCAGCUuGCGG----CGG- -5'
11129 5' -52.6 NC_002794.1 + 53298 0.67 0.985471
Target:  5'- --cAGGUGcCGagcgGUCGGccgGCGCCGCg -3'
miRNA:   3'- acuUCCACuGCaa--CAGCU---UGCGGCGg -5'
11129 5' -52.6 NC_002794.1 + 14455 0.67 0.985471
Target:  5'- cGcGGGcGACcgUGUCGAGCGgCgCGCCg -3'
miRNA:   3'- aCuUCCaCUGcaACAGCUUGC-G-GCGG- -5'
11129 5' -52.6 NC_002794.1 + 143434 0.67 0.985471
Target:  5'- gGAAGGccagcaUGACGgucaCGAGC-CCGCCg -3'
miRNA:   3'- aCUUCC------ACUGCaacaGCUUGcGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 130618 0.67 0.98369
Target:  5'- gGccGGuUGACGgUGUUcGGCGUCGCCg -3'
miRNA:   3'- aCuuCC-ACUGCaACAGcUUGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 116446 0.67 0.98369
Target:  5'- cGAcGGUGGCGaUGaCGAAgaGCgGCCg -3'
miRNA:   3'- aCUuCCACUGCaACaGCUUg-CGgCGG- -5'
11129 5' -52.6 NC_002794.1 + 117321 0.67 0.981748
Target:  5'- gGAAGGUGGCGa----GGAucCGCCGCa -3'
miRNA:   3'- aCUUCCACUGCaacagCUU--GCGGCGg -5'
11129 5' -52.6 NC_002794.1 + 121357 0.67 0.981748
Target:  5'- gGAAGuucGUcGACGgcGUcCGAGCcgGCCGCCg -3'
miRNA:   3'- aCUUC---CA-CUGCaaCA-GCUUG--CGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 142397 0.67 0.979638
Target:  5'- cGgcGGUGcagGCGgcGUCG-GCGgCGCCg -3'
miRNA:   3'- aCuuCCAC---UGCaaCAGCuUGCgGCGG- -5'
11129 5' -52.6 NC_002794.1 + 127980 0.67 0.979638
Target:  5'- cUGguGGUGugGUggUGUcugggCGGACGaCCGUCg -3'
miRNA:   3'- -ACuuCCACugCA--ACA-----GCUUGC-GGCGG- -5'
11129 5' -52.6 NC_002794.1 + 176920 0.67 0.979638
Target:  5'- --cGGGUGugGUUGguucaucGugGCCGCUg -3'
miRNA:   3'- acuUCCACugCAACagc----UugCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 66739 0.67 0.979638
Target:  5'- cGgcGGUGGCGgcGgcgCGuACGaCCGCUg -3'
miRNA:   3'- aCuuCCACUGCaaCa--GCuUGC-GGCGG- -5'
11129 5' -52.6 NC_002794.1 + 97264 0.67 0.979418
Target:  5'- gGGAGcacGUGGCGUUaccccugugggaaGUCG-ACGCgGCCa -3'
miRNA:   3'- aCUUC---CACUGCAA-------------CAGCuUGCGgCGG- -5'
11129 5' -52.6 NC_002794.1 + 114721 0.67 0.979195
Target:  5'- cGgcGGcGGCGgcuccggguucGUCGAgccgGCGCCGCCc -3'
miRNA:   3'- aCuuCCaCUGCaa---------CAGCU----UGCGGCGG- -5'
11129 5' -52.6 NC_002794.1 + 89399 0.68 0.977352
Target:  5'- ---cGGUGAgGUccGUgGAGCGCCGgCg -3'
miRNA:   3'- acuuCCACUgCAa-CAgCUUGCGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.