miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11130 3' -56.1 NC_002794.1 + 156194 0.66 0.940079
Target:  5'- uCAUcGGAGucGCCGgucGGAGGGCCggCGAc -3'
miRNA:   3'- -GUGuUCUC--UGGCa--UCUCCCGGgaGCU- -5'
11130 3' -56.1 NC_002794.1 + 123288 0.66 0.935358
Target:  5'- uCGCGGGAGACCugcugcUGGAGGaGaUCUUCGAg -3'
miRNA:   3'- -GUGUUCUCUGGc-----AUCUCC-C-GGGAGCU- -5'
11130 3' -56.1 NC_002794.1 + 48626 0.66 0.930407
Target:  5'- aCGCgGAGcGGCCGUc-GGGGCCCgCGAg -3'
miRNA:   3'- -GUG-UUCuCUGGCAucUCCCGGGaGCU- -5'
11130 3' -56.1 NC_002794.1 + 115957 0.67 0.914173
Target:  5'- uCGCcGGGGACCGUGGGGGGgag-CGGg -3'
miRNA:   3'- -GUGuUCUCUGGCAUCUCCCgggaGCU- -5'
11130 3' -56.1 NC_002794.1 + 40534 0.67 0.902206
Target:  5'- gACGGGAGACg--AGGGGGCCggCGGc -3'
miRNA:   3'- gUGUUCUCUGgcaUCUCCCGGgaGCU- -5'
11130 3' -56.1 NC_002794.1 + 109432 0.68 0.875602
Target:  5'- gCACuGAGGGACCGccGGGGucgcccGCCCUCGc -3'
miRNA:   3'- -GUG-UUCUCUGGCauCUCC------CGGGAGCu -5'
11130 3' -56.1 NC_002794.1 + 42516 0.68 0.868416
Target:  5'- aGCGAGAGAgagcCCG-AGGGaGGCCCggucCGAa -3'
miRNA:   3'- gUGUUCUCU----GGCaUCUC-CCGGGa---GCU- -5'
11130 3' -56.1 NC_002794.1 + 35869 0.68 0.861026
Target:  5'- gACGAGAGAacgaaCG-AGAGaGGCCgUCGGa -3'
miRNA:   3'- gUGUUCUCUg----GCaUCUC-CCGGgAGCU- -5'
11130 3' -56.1 NC_002794.1 + 129142 0.68 0.853436
Target:  5'- gCGCGucGAGACUGUGucGcGGCCCUCGc -3'
miRNA:   3'- -GUGUu-CUCUGGCAUcuC-CCGGGAGCu -5'
11130 3' -56.1 NC_002794.1 + 84752 0.69 0.812723
Target:  5'- cCACGAccGGCCGcgAGAGGGCCgUcCGAg -3'
miRNA:   3'- -GUGUUcuCUGGCa-UCUCCCGGgA-GCU- -5'
11130 3' -56.1 NC_002794.1 + 5940 0.69 0.804076
Target:  5'- cCACAAGAGAgCGUucAGGGGGCaauuCCUUa- -3'
miRNA:   3'- -GUGUUCUCUgGCA--UCUCCCG----GGAGcu -5'
11130 3' -56.1 NC_002794.1 + 61753 0.7 0.79528
Target:  5'- gCGCGAGGuGugCGagGGGGGGUCCUCu- -3'
miRNA:   3'- -GUGUUCU-CugGCa-UCUCCCGGGAGcu -5'
11130 3' -56.1 NC_002794.1 + 70289 0.7 0.786341
Target:  5'- --aGAGcAGGCCG-GGGGGGCCCgggcgCGAa -3'
miRNA:   3'- gugUUC-UCUGGCaUCUCCCGGGa----GCU- -5'
11130 3' -56.1 NC_002794.1 + 24 0.7 0.777269
Target:  5'- aCACGAaaacGAGGCCGccGcGGGCUCUCGGa -3'
miRNA:   3'- -GUGUU----CUCUGGCauCuCCCGGGAGCU- -5'
11130 3' -56.1 NC_002794.1 + 121028 0.7 0.777269
Target:  5'- -cCAAGAGGCCGgAGAGcGGCgCgUCGGg -3'
miRNA:   3'- guGUUCUCUGGCaUCUC-CCG-GgAGCU- -5'
11130 3' -56.1 NC_002794.1 + 151867 0.7 0.758758
Target:  5'- gCGCAucuGcAGcCCGUGGaAGuGGCCCUCGAu -3'
miRNA:   3'- -GUGUu--C-UCuGGCAUC-UC-CCGGGAGCU- -5'
11130 3' -56.1 NC_002794.1 + 126658 0.7 0.749336
Target:  5'- -cCGAGAGACCgacgggccgcGgcGAGGGCCCgaaUCGGg -3'
miRNA:   3'- guGUUCUCUGG----------CauCUCCCGGG---AGCU- -5'
11130 3' -56.1 NC_002794.1 + 115716 0.71 0.700912
Target:  5'- gUACAGGAGccACUGggcggucGGGGGGCCCUgGAu -3'
miRNA:   3'- -GUGUUCUC--UGGCa------UCUCCCGGGAgCU- -5'
11130 3' -56.1 NC_002794.1 + 75230 0.72 0.691025
Target:  5'- uGCGAGAGACaUGaAGAGGGCgCUCa- -3'
miRNA:   3'- gUGUUCUCUG-GCaUCUCCCGgGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.