Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11130 | 3' | -56.1 | NC_002794.1 | + | 156194 | 0.66 | 0.940079 |
Target: 5'- uCAUcGGAGucGCCGgucGGAGGGCCggCGAc -3' miRNA: 3'- -GUGuUCUC--UGGCa--UCUCCCGGgaGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 123288 | 0.66 | 0.935358 |
Target: 5'- uCGCGGGAGACCugcugcUGGAGGaGaUCUUCGAg -3' miRNA: 3'- -GUGUUCUCUGGc-----AUCUCC-C-GGGAGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 48626 | 0.66 | 0.930407 |
Target: 5'- aCGCgGAGcGGCCGUc-GGGGCCCgCGAg -3' miRNA: 3'- -GUG-UUCuCUGGCAucUCCCGGGaGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 40534 | 0.67 | 0.902206 |
Target: 5'- gACGGGAGACg--AGGGGGCCggCGGc -3' miRNA: 3'- gUGUUCUCUGgcaUCUCCCGGgaGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 115957 | 0.67 | 0.914173 |
Target: 5'- uCGCcGGGGACCGUGGGGGGgag-CGGg -3' miRNA: 3'- -GUGuUCUCUGGCAUCUCCCgggaGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 109432 | 0.68 | 0.875602 |
Target: 5'- gCACuGAGGGACCGccGGGGucgcccGCCCUCGc -3' miRNA: 3'- -GUG-UUCUCUGGCauCUCC------CGGGAGCu -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 129142 | 0.68 | 0.853436 |
Target: 5'- gCGCGucGAGACUGUGucGcGGCCCUCGc -3' miRNA: 3'- -GUGUu-CUCUGGCAUcuC-CCGGGAGCu -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 35869 | 0.68 | 0.861026 |
Target: 5'- gACGAGAGAacgaaCG-AGAGaGGCCgUCGGa -3' miRNA: 3'- gUGUUCUCUg----GCaUCUC-CCGGgAGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 42516 | 0.68 | 0.868416 |
Target: 5'- aGCGAGAGAgagcCCG-AGGGaGGCCCggucCGAa -3' miRNA: 3'- gUGUUCUCU----GGCaUCUC-CCGGGa---GCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 5940 | 0.69 | 0.804076 |
Target: 5'- cCACAAGAGAgCGUucAGGGGGCaauuCCUUa- -3' miRNA: 3'- -GUGUUCUCUgGCA--UCUCCCG----GGAGcu -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 84752 | 0.69 | 0.812723 |
Target: 5'- cCACGAccGGCCGcgAGAGGGCCgUcCGAg -3' miRNA: 3'- -GUGUUcuCUGGCa-UCUCCCGGgA-GCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 61753 | 0.7 | 0.79528 |
Target: 5'- gCGCGAGGuGugCGagGGGGGGUCCUCu- -3' miRNA: 3'- -GUGUUCU-CugGCa-UCUCCCGGGAGcu -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 70289 | 0.7 | 0.786341 |
Target: 5'- --aGAGcAGGCCG-GGGGGGCCCgggcgCGAa -3' miRNA: 3'- gugUUC-UCUGGCaUCUCCCGGGa----GCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 24 | 0.7 | 0.777269 |
Target: 5'- aCACGAaaacGAGGCCGccGcGGGCUCUCGGa -3' miRNA: 3'- -GUGUU----CUCUGGCauCuCCCGGGAGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 121028 | 0.7 | 0.777269 |
Target: 5'- -cCAAGAGGCCGgAGAGcGGCgCgUCGGg -3' miRNA: 3'- guGUUCUCUGGCaUCUC-CCG-GgAGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 151867 | 0.7 | 0.758758 |
Target: 5'- gCGCAucuGcAGcCCGUGGaAGuGGCCCUCGAu -3' miRNA: 3'- -GUGUu--C-UCuGGCAUC-UC-CCGGGAGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 126658 | 0.7 | 0.749336 |
Target: 5'- -cCGAGAGACCgacgggccgcGgcGAGGGCCCgaaUCGGg -3' miRNA: 3'- guGUUCUCUGG----------CauCUCCCGGG---AGCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 115716 | 0.71 | 0.700912 |
Target: 5'- gUACAGGAGccACUGggcggucGGGGGGCCCUgGAu -3' miRNA: 3'- -GUGUUCUC--UGGCa------UCUCCCGGGAgCU- -5' |
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11130 | 3' | -56.1 | NC_002794.1 | + | 75230 | 0.72 | 0.691025 |
Target: 5'- uGCGAGAGACaUGaAGAGGGCgCUCa- -3' miRNA: 3'- gUGUUCUCUG-GCaUCUCCCGgGAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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