miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11130 5' -58.1 NC_002794.1 + 116799 0.66 0.880611
Target:  5'- --gCGAGccGGCUCgGGCGCCguaGCGCGggUCg -3'
miRNA:   3'- caaGCUU--CCGAG-CCGCGG---CGCGU--AGa -5'
11130 5' -58.1 NC_002794.1 + 96367 0.66 0.880611
Target:  5'- --cCGAGGGCaccgUGGCGCCGaGCGa-- -3'
miRNA:   3'- caaGCUUCCGa---GCCGCGGCgCGUaga -5'
11130 5' -58.1 NC_002794.1 + 40487 0.66 0.873625
Target:  5'- -aUCGAAcGGC-CGGCGCuCGcCGC-UCg -3'
miRNA:   3'- caAGCUU-CCGaGCCGCG-GC-GCGuAGa -5'
11130 5' -58.1 NC_002794.1 + 182980 0.66 0.873625
Target:  5'- cGUUCGAGccgacGGC-CGGCGCUuCGCcgCg -3'
miRNA:   3'- -CAAGCUU-----CCGaGCCGCGGcGCGuaGa -5'
11130 5' -58.1 NC_002794.1 + 21927 0.66 0.866433
Target:  5'- --aCGAcGGCggCGGCGCgGCGCu--- -3'
miRNA:   3'- caaGCUuCCGa-GCCGCGgCGCGuaga -5'
11130 5' -58.1 NC_002794.1 + 14725 0.66 0.866433
Target:  5'- --gCGGcuucGGCUCGGgGuCCGgCGCGUCa -3'
miRNA:   3'- caaGCUu---CCGAGCCgC-GGC-GCGUAGa -5'
11130 5' -58.1 NC_002794.1 + 147095 0.66 0.862022
Target:  5'- --aCGAAGGCgUCGGCGCC-CGgcccaaggacgaagaCGUCg -3'
miRNA:   3'- caaGCUUCCG-AGCCGCGGcGC---------------GUAGa -5'
11130 5' -58.1 NC_002794.1 + 182454 0.66 0.859041
Target:  5'- -cUCGGAGaGCgCGGCGgUGCGCggCg -3'
miRNA:   3'- caAGCUUC-CGaGCCGCgGCGCGuaGa -5'
11130 5' -58.1 NC_002794.1 + 181771 0.66 0.859041
Target:  5'- --cCGAuGGCgccGCGCCGCcGCGUCUc -3'
miRNA:   3'- caaGCUuCCGagcCGCGGCG-CGUAGA- -5'
11130 5' -58.1 NC_002794.1 + 74377 0.66 0.854512
Target:  5'- cUUCGggGGCggcCGGCGCgacuacacgaccgaGCGCcUCg -3'
miRNA:   3'- cAAGCuuCCGa--GCCGCGg-------------CGCGuAGa -5'
11130 5' -58.1 NC_002794.1 + 126606 0.66 0.851454
Target:  5'- --cCG-AGGC-CGGCGCCGaCGUcgCg -3'
miRNA:   3'- caaGCuUCCGaGCCGCGGC-GCGuaGa -5'
11130 5' -58.1 NC_002794.1 + 156398 0.66 0.851454
Target:  5'- ---aGAGcGGC-CGGCGCCGCGgCcgCg -3'
miRNA:   3'- caagCUU-CCGaGCCGCGGCGC-GuaGa -5'
11130 5' -58.1 NC_002794.1 + 126278 0.66 0.851454
Target:  5'- --gCGGcgcuGGGCUUGcuguGCGCCGCGCGcCUg -3'
miRNA:   3'- caaGCU----UCCGAGC----CGCGGCGCGUaGA- -5'
11130 5' -58.1 NC_002794.1 + 108396 0.66 0.851454
Target:  5'- --gCGGAGGCUcCGGCGgCgGCGCc--- -3'
miRNA:   3'- caaGCUUCCGA-GCCGC-GgCGCGuaga -5'
11130 5' -58.1 NC_002794.1 + 139194 0.66 0.851454
Target:  5'- -gUCGAAGGCcaugaCGGCGacgaaGgGCGUCUg -3'
miRNA:   3'- caAGCUUCCGa----GCCGCgg---CgCGUAGA- -5'
11130 5' -58.1 NC_002794.1 + 145376 0.66 0.850685
Target:  5'- cGggCGGAGacgcuccGCUCGGUGgCGCGCcgCg -3'
miRNA:   3'- -CaaGCUUC-------CGAGCCGCgGCGCGuaGa -5'
11130 5' -58.1 NC_002794.1 + 117505 0.66 0.843678
Target:  5'- -cUCGAucaGGuGCUgGGUgcGCCgGCGCAUCUg -3'
miRNA:   3'- caAGCU---UC-CGAgCCG--CGG-CGCGUAGA- -5'
11130 5' -58.1 NC_002794.1 + 95585 0.66 0.843678
Target:  5'- --aUGucGGCUcgaucuacgCGGCGCCggaGCGCAUCg -3'
miRNA:   3'- caaGCuuCCGA---------GCCGCGG---CGCGUAGa -5'
11130 5' -58.1 NC_002794.1 + 141604 0.66 0.843678
Target:  5'- --cCGGGcGGCUCGGCGaCCGgcuCGCgGUCUa -3'
miRNA:   3'- caaGCUU-CCGAGCCGC-GGC---GCG-UAGA- -5'
11130 5' -58.1 NC_002794.1 + 194972 0.67 0.83572
Target:  5'- --aCGccGGCUCGuacaggcacaGCGCCGCGCGc-- -3'
miRNA:   3'- caaGCuuCCGAGC----------CGCGGCGCGUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.