miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11131 3' -53.1 NC_002794.1 + 8613 0.66 0.989932
Target:  5'- -cGCACGUaCGacGUGcGGAGcGCGGUGGa -3'
miRNA:   3'- guUGUGCAaGUc-CAC-CUUC-CGCCACC- -5'
11131 3' -53.1 NC_002794.1 + 120495 0.66 0.985471
Target:  5'- aCGAgGCGcugCAGcccGUGGGcagccugcAGGCGGUGGc -3'
miRNA:   3'- -GUUgUGCaa-GUC---CACCU--------UCCGCCACC- -5'
11131 3' -53.1 NC_002794.1 + 2702 0.66 0.985471
Target:  5'- uGACGUGUUCAGGggcGGucuGGGGCGGUc- -3'
miRNA:   3'- gUUGUGCAAGUCCa--CC---UUCCGCCAcc -5'
11131 3' -53.1 NC_002794.1 + 183574 0.66 0.98369
Target:  5'- cCGACACGggCcuuuaauacGGUGG-GGGCGGaGGg -3'
miRNA:   3'- -GUUGUGCaaGu--------CCACCuUCCGCCaCC- -5'
11131 3' -53.1 NC_002794.1 + 80409 0.67 0.981748
Target:  5'- --cCGCGgccCAGGUGGcgccGGGCGG-GGc -3'
miRNA:   3'- guuGUGCaa-GUCCACCu---UCCGCCaCC- -5'
11131 3' -53.1 NC_002794.1 + 147969 0.67 0.981748
Target:  5'- gAGCGCGUgCAGcGUGu--GGCGGUGu -3'
miRNA:   3'- gUUGUGCAaGUC-CACcuuCCGCCACc -5'
11131 3' -53.1 NC_002794.1 + 9735 0.67 0.981748
Target:  5'- aGGCAC---CGGGUGGGuAGGUGGgggGGg -3'
miRNA:   3'- gUUGUGcaaGUCCACCU-UCCGCCa--CC- -5'
11131 3' -53.1 NC_002794.1 + 55259 0.67 0.974883
Target:  5'- gGACGCcgaagagcCGGG-GGgcGGCGGUGGc -3'
miRNA:   3'- gUUGUGcaa-----GUCCaCCuuCCGCCACC- -5'
11131 3' -53.1 NC_002794.1 + 179967 0.67 0.974883
Target:  5'- aCAGCAgGagCGGcaGGAgccaAGGCGGUGGc -3'
miRNA:   3'- -GUUGUgCaaGUCcaCCU----UCCGCCACC- -5'
11131 3' -53.1 NC_002794.1 + 123406 0.67 0.974105
Target:  5'- --cCGCG-UCGGcGUGGAguacgacagcgacgAGGCGGUGa -3'
miRNA:   3'- guuGUGCaAGUC-CACCU--------------UCCGCCACc -5'
11131 3' -53.1 NC_002794.1 + 126709 0.68 0.963032
Target:  5'- --cCGCGgacUCGGGgcgaGGggGGUgGGUGGg -3'
miRNA:   3'- guuGUGCa--AGUCCa---CCuuCCG-CCACC- -5'
11131 3' -53.1 NC_002794.1 + 37297 0.68 0.963032
Target:  5'- aCGACACGUagGGGaacgcgGGGcagaagacGGaGCGGUGGg -3'
miRNA:   3'- -GUUGUGCAagUCCa-----CCU--------UC-CGCCACC- -5'
11131 3' -53.1 NC_002794.1 + 135648 0.69 0.942913
Target:  5'- aCAGCGCGga-GGGUGGggGGguguccuccacgaCGGgcagGGg -3'
miRNA:   3'- -GUUGUGCaagUCCACCuuCC-------------GCCa---CC- -5'
11131 3' -53.1 NC_002794.1 + 177951 0.69 0.92879
Target:  5'- uCGGCGaggUC-GGUGGAcGGUGGUGGa -3'
miRNA:   3'- -GUUGUgcaAGuCCACCUuCCGCCACC- -5'
11131 3' -53.1 NC_002794.1 + 110466 0.7 0.899775
Target:  5'- cCGGCuCGUcggcUCGGGgGGuagaGAGGCGGUGGc -3'
miRNA:   3'- -GUUGuGCA----AGUCCaCC----UUCCGCCACC- -5'
11131 3' -53.1 NC_002794.1 + 139992 0.71 0.872422
Target:  5'- gCGACGCGggacggugCGGGUGGAGGccGCGGaGGc -3'
miRNA:   3'- -GUUGUGCaa------GUCCACCUUC--CGCCaCC- -5'
11131 3' -53.1 NC_002794.1 + 142299 0.71 0.865038
Target:  5'- gGAgGCGguaCAGGUGGcgGAGGCGGcGGc -3'
miRNA:   3'- gUUgUGCaa-GUCCACC--UUCCGCCaCC- -5'
11131 3' -53.1 NC_002794.1 + 87214 0.71 0.865038
Target:  5'- aGGC-CGggCGGGUGGGggugcaggccGGGCgGGUGGg -3'
miRNA:   3'- gUUGuGCaaGUCCACCU----------UCCG-CCACC- -5'
11131 3' -53.1 NC_002794.1 + 87172 0.71 0.865038
Target:  5'- aGGC-CGggCGGGUGGGggugcaggccGGGCgGGUGGg -3'
miRNA:   3'- gUUGuGCaaGUCCACCU----------UCCG-CCACC- -5'
11131 3' -53.1 NC_002794.1 + 87130 0.71 0.865038
Target:  5'- aGGC-CGggCGGGUGGGggugcaggccGGGCgGGUGGg -3'
miRNA:   3'- gUUGuGCaaGUCCACCU----------UCCG-CCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.