miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11131 5' -58.4 NC_002794.1 + 17668 0.66 0.896605
Target:  5'- cCGCCACCG-C-CGC-CGGcCccGGCGGa -3'
miRNA:   3'- -GCGGUGGCuGuGCGuGUCuGu-CCGCC- -5'
11131 5' -58.4 NC_002794.1 + 142475 0.66 0.896605
Target:  5'- cCGgCACCgugGACGCGUGCGgcgccggcagcGACGuGGCGGa -3'
miRNA:   3'- -GCgGUGG---CUGUGCGUGU-----------CUGU-CCGCC- -5'
11131 5' -58.4 NC_002794.1 + 22437 0.66 0.896605
Target:  5'- gGaCACCGGucuggacacUACGCACAGA--GGCGGu -3'
miRNA:   3'- gCgGUGGCU---------GUGCGUGUCUguCCGCC- -5'
11131 5' -58.4 NC_002794.1 + 114007 0.66 0.896605
Target:  5'- gCGCCggaggAgCGACuCGUACAGGCGGggcaGCGGc -3'
miRNA:   3'- -GCGG-----UgGCUGuGCGUGUCUGUC----CGCC- -5'
11131 5' -58.4 NC_002794.1 + 56902 0.66 0.896605
Target:  5'- uGCCGCgCGugGC-CACGGGCgccGGGCu- -3'
miRNA:   3'- gCGGUG-GCugUGcGUGUCUG---UCCGcc -5'
11131 5' -58.4 NC_002794.1 + 56332 0.66 0.896605
Target:  5'- gGCCGgCGACGCGgcgaagaGCAGcucgaAgAGGCGGu -3'
miRNA:   3'- gCGGUgGCUGUGCg------UGUC-----UgUCCGCC- -5'
11131 5' -58.4 NC_002794.1 + 47924 0.66 0.896605
Target:  5'- gGCC-CCGACccCGaCGCAGAUcGGCGc -3'
miRNA:   3'- gCGGuGGCUGu-GC-GUGUCUGuCCGCc -5'
11131 5' -58.4 NC_002794.1 + 149208 0.66 0.896605
Target:  5'- aGCUAuCCGGCugGC-CGGAagcgAGGCGc -3'
miRNA:   3'- gCGGU-GGCUGugCGuGUCUg---UCCGCc -5'
11131 5' -58.4 NC_002794.1 + 137567 0.66 0.896605
Target:  5'- gCGCCGCCGuCGC-CGCcgGGGCcggAGuGCGGg -3'
miRNA:   3'- -GCGGUGGCuGUGcGUG--UCUG---UC-CGCC- -5'
11131 5' -58.4 NC_002794.1 + 17230 0.66 0.896605
Target:  5'- cCGCCACCGcCGC-CACcacccuucGAC-GGCGGc -3'
miRNA:   3'- -GCGGUGGCuGUGcGUGu-------CUGuCCGCC- -5'
11131 5' -58.4 NC_002794.1 + 190967 0.66 0.896605
Target:  5'- gCGCC-UCGGgGCaGCagaGCAGGCAGcGCGGc -3'
miRNA:   3'- -GCGGuGGCUgUG-CG---UGUCUGUC-CGCC- -5'
11131 5' -58.4 NC_002794.1 + 12071 0.66 0.89598
Target:  5'- gCGCCGCCGAUgaacacgACGCugAccuggaccGACGGGaCGc -3'
miRNA:   3'- -GCGGUGGCUG-------UGCGugU--------CUGUCC-GCc -5'
11131 5' -58.4 NC_002794.1 + 96860 0.66 0.892818
Target:  5'- gGCCACCgucguguccucgacgGACggugGCGCuacgggGCAGGCgucGGGCGGa -3'
miRNA:   3'- gCGGUGG---------------CUG----UGCG------UGUCUG---UCCGCC- -5'
11131 5' -58.4 NC_002794.1 + 71752 0.66 0.892818
Target:  5'- cCGCCGCCGGCucuuccgaccgguccGCGCcgucGCGcGGCGagucgccccccGGCGGg -3'
miRNA:   3'- -GCGGUGGCUG---------------UGCG----UGU-CUGU-----------CCGCC- -5'
11131 5' -58.4 NC_002794.1 + 184951 0.66 0.890251
Target:  5'- aGCUgcGCCGGCcCGCGCAGccgcucguCGGGCa- -3'
miRNA:   3'- gCGG--UGGCUGuGCGUGUCu-------GUCCGcc -5'
11131 5' -58.4 NC_002794.1 + 194993 0.66 0.890251
Target:  5'- gCGCCGCgCG-CACGCcCuGcCGGGCGa -3'
miRNA:   3'- -GCGGUG-GCuGUGCGuGuCuGUCCGCc -5'
11131 5' -58.4 NC_002794.1 + 64831 0.66 0.890251
Target:  5'- cCGgCGCCGACGa-C-CGGACGGcGCGGc -3'
miRNA:   3'- -GCgGUGGCUGUgcGuGUCUGUC-CGCC- -5'
11131 5' -58.4 NC_002794.1 + 139494 0.66 0.890251
Target:  5'- gGgCGCgGGCGCGCuGCAGcACAuGGCGa -3'
miRNA:   3'- gCgGUGgCUGUGCG-UGUC-UGU-CCGCc -5'
11131 5' -58.4 NC_002794.1 + 55300 0.66 0.890251
Target:  5'- gCGgCGgCGGCGuCGCgGCGGGCgcGGGCGGc -3'
miRNA:   3'- -GCgGUgGCUGU-GCG-UGUCUG--UCCGCC- -5'
11131 5' -58.4 NC_002794.1 + 80571 0.66 0.890251
Target:  5'- gCGCCguGCCGA--CGCACGGGCuGaCGGa -3'
miRNA:   3'- -GCGG--UGGCUguGCGUGUCUGuCcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.