miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 3' -54.4 NC_002794.1 + 83851 0.66 0.98358
Target:  5'- cGCCGaUCGggaaGCCGUCGUcccGGUCGgcgCGa -3'
miRNA:   3'- cUGGC-AGCag--UGGCAGCA---CUAGCa--GC- -5'
11132 3' -54.4 NC_002794.1 + 54506 0.66 0.98358
Target:  5'- aACCGaCGUUGaCGUUGUcGGUCGUCGa -3'
miRNA:   3'- cUGGCaGCAGUgGCAGCA-CUAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 149237 0.66 0.981674
Target:  5'- cGCCGcCGUCGCCGg---GGUCG-CGg -3'
miRNA:   3'- cUGGCaGCAGUGGCagcaCUAGCaGC- -5'
11132 3' -54.4 NC_002794.1 + 58311 0.66 0.981674
Target:  5'- aGACCGcCGcgcucugcaCGCCGcgCGUGcUCGUCGg -3'
miRNA:   3'- -CUGGCaGCa--------GUGGCa-GCACuAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 47412 0.66 0.977372
Target:  5'- cGCCGUCGgCGCCGUCGcgcgGAgCGcCa -3'
miRNA:   3'- cUGGCAGCaGUGGCAGCa---CUaGCaGc -5'
11132 3' -54.4 NC_002794.1 + 63487 0.66 0.977372
Target:  5'- cGCCGUCGacgaCGCCG-CGgcGUCGUCGu -3'
miRNA:   3'- cUGGCAGCa---GUGGCaGCacUAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 110059 0.66 0.974961
Target:  5'- gGAuCCGUCGgagagcgcggaUCGCgGUCGUGAgaCGUUGg -3'
miRNA:   3'- -CU-GGCAGC-----------AGUGgCAGCACUa-GCAGC- -5'
11132 3' -54.4 NC_002794.1 + 120717 0.66 0.974961
Target:  5'- cGCCGUCGUUcuUCGUCGUGGgcaCGgCGg -3'
miRNA:   3'- cUGGCAGCAGu-GGCAGCACUa--GCaGC- -5'
11132 3' -54.4 NC_002794.1 + 193074 0.67 0.970723
Target:  5'- gGGCCGUCGcgggacagccgcagCAgCGUCGUGAUCa--- -3'
miRNA:   3'- -CUGGCAGCa-------------GUgGCAGCACUAGcagc -5'
11132 3' -54.4 NC_002794.1 + 193584 0.67 0.963438
Target:  5'- cGCCGguggCGgcUCACCGUCGUGuagCGUa- -3'
miRNA:   3'- cUGGCa---GC--AGUGGCAGCACua-GCAgc -5'
11132 3' -54.4 NC_002794.1 + 189852 0.68 0.956469
Target:  5'- cGGCCG-CGgaGCCGUCGgcGUCGUCGc -3'
miRNA:   3'- -CUGGCaGCagUGGCAGCacUAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 175444 0.68 0.956469
Target:  5'- cGAUCGUCGUCGaucaaCGUgggugUGUGAUCGgaUCGa -3'
miRNA:   3'- -CUGGCAGCAGUg----GCA-----GCACUAGC--AGC- -5'
11132 3' -54.4 NC_002794.1 + 105482 0.68 0.952666
Target:  5'- aGCCGUCGUCuCCGgUCGUGGagcCGcCGc -3'
miRNA:   3'- cUGGCAGCAGuGGC-AGCACUa--GCaGC- -5'
11132 3' -54.4 NC_002794.1 + 119632 0.68 0.948647
Target:  5'- cGGCCGUCGUCAgCa-CGgcuUCGUCGg -3'
miRNA:   3'- -CUGGCAGCAGUgGcaGCacuAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 187580 0.68 0.944407
Target:  5'- cGCCGUCGgcgcggcCGCCGUCGcGAcgcccggCGUCGc -3'
miRNA:   3'- cUGGCAGCa------GUGGCAGCaCUa------GCAGC- -5'
11132 3' -54.4 NC_002794.1 + 21955 0.68 0.942648
Target:  5'- aGGCCGUCGgccgcucccgcggCGCCGUCGUcuccgcGAccCGUCGc -3'
miRNA:   3'- -CUGGCAGCa------------GUGGCAGCA------CUa-GCAGC- -5'
11132 3' -54.4 NC_002794.1 + 98970 0.68 0.939944
Target:  5'- cGCCGUCGgcggCGCCGUggccucgGUGGUCGgCGg -3'
miRNA:   3'- cUGGCAGCa---GUGGCAg------CACUAGCaGC- -5'
11132 3' -54.4 NC_002794.1 + 52910 0.68 0.939944
Target:  5'- cGCCGcCGUCGCCGcCGccGUCGcUCGg -3'
miRNA:   3'- cUGGCaGCAGUGGCaGCacUAGC-AGC- -5'
11132 3' -54.4 NC_002794.1 + 49024 0.68 0.935257
Target:  5'- cGGCCGcggCGUCGuCCGgCGcGGUCGUCa -3'
miRNA:   3'- -CUGGCa--GCAGU-GGCaGCaCUAGCAGc -5'
11132 3' -54.4 NC_002794.1 + 138570 0.7 0.88965
Target:  5'- -uCCGUCGUCGCuCGaUCGagGcgCGUCGg -3'
miRNA:   3'- cuGGCAGCAGUG-GC-AGCa-CuaGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.