miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 3' -54.4 NC_002794.1 + 116092 0.7 0.882955
Target:  5'- cGGCgGUCGUCGCCGgggUCGaGGUCGaggUCGa -3'
miRNA:   3'- -CUGgCAGCAGUGGC---AGCaCUAGC---AGC- -5'
11132 3' -54.4 NC_002794.1 + 32814 0.7 0.868939
Target:  5'- cGACCGUCGUCuuCGUCGgccUCG-CGg -3'
miRNA:   3'- -CUGGCAGCAGugGCAGCacuAGCaGC- -5'
11132 3' -54.4 NC_002794.1 + 28713 0.72 0.811292
Target:  5'- uGCCGUCGUCGCCGcCGUccgaccguguccccGAggccCGUCGc -3'
miRNA:   3'- cUGGCAGCAGUGGCaGCA--------------CUa---GCAGC- -5'
11132 3' -54.4 NC_002794.1 + 99055 0.72 0.796587
Target:  5'- -cUCGUCGUgGCCGUCGUcgucAUCGUCu -3'
miRNA:   3'- cuGGCAGCAgUGGCAGCAc---UAGCAGc -5'
11132 3' -54.4 NC_002794.1 + 48593 0.72 0.796587
Target:  5'- gGAgCGgcgCGUCGCCGUCGg---CGUCGg -3'
miRNA:   3'- -CUgGCa--GCAGUGGCAGCacuaGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 146272 0.73 0.76967
Target:  5'- -gUCGUCGUCGUCGUCGUcGAccUCGUCGu -3'
miRNA:   3'- cuGGCAGCAGUGGCAGCA-CU--AGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 22805 0.73 0.760454
Target:  5'- cGACCGcUCGacUCACCGUCGUcuucgCGUCGc -3'
miRNA:   3'- -CUGGC-AGC--AGUGGCAGCAcua--GCAGC- -5'
11132 3' -54.4 NC_002794.1 + 107274 0.73 0.76967
Target:  5'- cGCCGUcCGcCGCCGUCGccccGUCGUCGa -3'
miRNA:   3'- cUGGCA-GCaGUGGCAGCac--UAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 180840 0.74 0.693404
Target:  5'- -cCCGgCGUCACCGUCGUcuacGGccUCGUCGg -3'
miRNA:   3'- cuGGCaGCAGUGGCAGCA----CU--AGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 49495 0.75 0.673685
Target:  5'- cGACC-UCGUCGCCGUCGUcGcUCGcCGg -3'
miRNA:   3'- -CUGGcAGCAGUGGCAGCA-CuAGCaGC- -5'
11132 3' -54.4 NC_002794.1 + 118298 0.77 0.554764
Target:  5'- cGCCGggcgCGUCGCuCGUCGUcGUCGUCGc -3'
miRNA:   3'- cUGGCa---GCAGUG-GCAGCAcUAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 131291 0.77 0.535358
Target:  5'- cGCCGUCGcucCGCCGccCGUGGUCGUCa -3'
miRNA:   3'- cUGGCAGCa--GUGGCa-GCACUAGCAGc -5'
11132 3' -54.4 NC_002794.1 + 146243 0.77 0.516195
Target:  5'- --gCGUCGUCAUCGUCGUcGAccUCGUCGu -3'
miRNA:   3'- cugGCAGCAGUGGCAGCA-CU--AGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 66025 0.78 0.487991
Target:  5'- cGCgGUCGUCGCCGUCG---UCGUCGg -3'
miRNA:   3'- cUGgCAGCAGUGGCAGCacuAGCAGC- -5'
11132 3' -54.4 NC_002794.1 + 110562 0.78 0.487991
Target:  5'- --gCGUCGUCGCCGUCGUcGAUCGg-- -3'
miRNA:   3'- cugGCAGCAGUGGCAGCA-CUAGCagc -5'
11132 3' -54.4 NC_002794.1 + 105752 0.79 0.425243
Target:  5'- cGCCGUCGUCGCCGUUcaucggggucgGUGGgccgCGUCGa -3'
miRNA:   3'- cUGGCAGCAGUGGCAG-----------CACUa---GCAGC- -5'
11132 3' -54.4 NC_002794.1 + 188211 0.79 0.460534
Target:  5'- aACCGUCGUCcUCGUCGUcGUCGUCa -3'
miRNA:   3'- cUGGCAGCAGuGGCAGCAcUAGCAGc -5'
11132 3' -54.4 NC_002794.1 + 65916 0.82 0.315484
Target:  5'- uGACCGUCGUCGCCGgcggCGgUGG-CGUCGg -3'
miRNA:   3'- -CUGGCAGCAGUGGCa---GC-ACUaGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.