Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11132 | 3' | -54.4 | NC_002794.1 | + | 21955 | 0.68 | 0.942648 |
Target: 5'- aGGCCGUCGgccgcucccgcggCGCCGUCGUcuccgcGAccCGUCGc -3' miRNA: 3'- -CUGGCAGCa------------GUGGCAGCA------CUa-GCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 22805 | 0.73 | 0.760454 |
Target: 5'- cGACCGcUCGacUCACCGUCGUcuucgCGUCGc -3' miRNA: 3'- -CUGGC-AGC--AGUGGCAGCAcua--GCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 28713 | 0.72 | 0.811292 |
Target: 5'- uGCCGUCGUCGCCGcCGUccgaccguguccccGAggccCGUCGc -3' miRNA: 3'- cUGGCAGCAGUGGCaGCA--------------CUa---GCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 32814 | 0.7 | 0.868939 |
Target: 5'- cGACCGUCGUCuuCGUCGgccUCG-CGg -3' miRNA: 3'- -CUGGCAGCAGugGCAGCacuAGCaGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 47412 | 0.66 | 0.977372 |
Target: 5'- cGCCGUCGgCGCCGUCGcgcgGAgCGcCa -3' miRNA: 3'- cUGGCAGCaGUGGCAGCa---CUaGCaGc -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 48593 | 0.72 | 0.796587 |
Target: 5'- gGAgCGgcgCGUCGCCGUCGg---CGUCGg -3' miRNA: 3'- -CUgGCa--GCAGUGGCAGCacuaGCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 49024 | 0.68 | 0.935257 |
Target: 5'- cGGCCGcggCGUCGuCCGgCGcGGUCGUCa -3' miRNA: 3'- -CUGGCa--GCAGU-GGCaGCaCUAGCAGc -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 49495 | 0.75 | 0.673685 |
Target: 5'- cGACC-UCGUCGCCGUCGUcGcUCGcCGg -3' miRNA: 3'- -CUGGcAGCAGUGGCAGCA-CuAGCaGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 52910 | 0.68 | 0.939944 |
Target: 5'- cGCCGcCGUCGCCGcCGccGUCGcUCGg -3' miRNA: 3'- cUGGCaGCAGUGGCaGCacUAGC-AGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 54506 | 0.66 | 0.98358 |
Target: 5'- aACCGaCGUUGaCGUUGUcGGUCGUCGa -3' miRNA: 3'- cUGGCaGCAGUgGCAGCA-CUAGCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 58311 | 0.66 | 0.981674 |
Target: 5'- aGACCGcCGcgcucugcaCGCCGcgCGUGcUCGUCGg -3' miRNA: 3'- -CUGGCaGCa--------GUGGCa-GCACuAGCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 63487 | 0.66 | 0.977372 |
Target: 5'- cGCCGUCGacgaCGCCG-CGgcGUCGUCGu -3' miRNA: 3'- cUGGCAGCa---GUGGCaGCacUAGCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 65916 | 0.82 | 0.315484 |
Target: 5'- uGACCGUCGUCGCCGgcggCGgUGG-CGUCGg -3' miRNA: 3'- -CUGGCAGCAGUGGCa---GC-ACUaGCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 66025 | 0.78 | 0.487991 |
Target: 5'- cGCgGUCGUCGCCGUCG---UCGUCGg -3' miRNA: 3'- cUGgCAGCAGUGGCAGCacuAGCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 83851 | 0.66 | 0.98358 |
Target: 5'- cGCCGaUCGggaaGCCGUCGUcccGGUCGgcgCGa -3' miRNA: 3'- cUGGC-AGCag--UGGCAGCA---CUAGCa--GC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 98970 | 0.68 | 0.939944 |
Target: 5'- cGCCGUCGgcggCGCCGUggccucgGUGGUCGgCGg -3' miRNA: 3'- cUGGCAGCa---GUGGCAg------CACUAGCaGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 99055 | 0.72 | 0.796587 |
Target: 5'- -cUCGUCGUgGCCGUCGUcgucAUCGUCu -3' miRNA: 3'- cuGGCAGCAgUGGCAGCAc---UAGCAGc -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 105482 | 0.68 | 0.952666 |
Target: 5'- aGCCGUCGUCuCCGgUCGUGGagcCGcCGc -3' miRNA: 3'- cUGGCAGCAGuGGC-AGCACUa--GCaGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 105752 | 0.79 | 0.425243 |
Target: 5'- cGCCGUCGUCGCCGUUcaucggggucgGUGGgccgCGUCGa -3' miRNA: 3'- cUGGCAGCAGUGGCAG-----------CACUa---GCAGC- -5' |
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11132 | 3' | -54.4 | NC_002794.1 | + | 107274 | 0.73 | 0.76967 |
Target: 5'- cGCCGUcCGcCGCCGUCGccccGUCGUCGa -3' miRNA: 3'- cUGGCA-GCaGUGGCAGCac--UAGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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