miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 129240 0.66 0.71836
Target:  5'- gGGCGGCuccggcgGaCUCGGGUcGagcgccucgucgugaGCGGGCCGGu -3'
miRNA:   3'- -CCGCCGca-----C-GGGCCCA-C---------------UGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 37870 0.66 0.714699
Target:  5'- cGGuCGGCGU-CUCGGGcGGCgGGGgCGGu -3'
miRNA:   3'- -CC-GCCGCAcGGGCCCaCUG-CUCgGCC- -5'
11132 5' -63.4 NC_002794.1 + 127981 0.66 0.714699
Target:  5'- uGGUGGUguggugGUGUCUGGGcgGACGAccgucGUCGGc -3'
miRNA:   3'- -CCGCCG------CACGGGCCCa-CUGCU-----CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 64115 0.66 0.714699
Target:  5'- cGGCGcGUcUGCaCGcGGUcGACGGGCUGGu -3'
miRNA:   3'- -CCGC-CGcACGgGC-CCA-CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 183526 0.66 0.713782
Target:  5'- cGCGGcCGUgcgcgccccguccGCCCGGG-GAcacugcgcgcCGAGCCGc -3'
miRNA:   3'- cCGCC-GCA-------------CGGGCCCaCU----------GCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 1363 0.66 0.705506
Target:  5'- gGGgGGCGUGUuccggacaccauCCGGGgGACaauGAGgCGGu -3'
miRNA:   3'- -CCgCCGCACG------------GGCCCaCUG---CUCgGCC- -5'
11132 5' -63.4 NC_002794.1 + 190008 0.66 0.705506
Target:  5'- -uCGGCccGUCCGGGUccaucGGCG-GCCGGu -3'
miRNA:   3'- ccGCCGcaCGGGCCCA-----CUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 89341 0.66 0.705506
Target:  5'- cGGCGGCGagaccuccgagGaCUCGGuGUGcgaaaGCGAGCCGu -3'
miRNA:   3'- -CCGCCGCa----------C-GGGCC-CAC-----UGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 142985 0.66 0.705506
Target:  5'- gGGCuGCGUGCCCGccGUGGCcAGgaacCCGGu -3'
miRNA:   3'- -CCGcCGCACGGGCc-CACUGcUC----GGCC- -5'
11132 5' -63.4 NC_002794.1 + 105546 0.66 0.705506
Target:  5'- cGGCGGCG-GCUCGGGcgaacgGAUagggugcgcguaGAGCaGGa -3'
miRNA:   3'- -CCGCCGCaCGGGCCCa-----CUG------------CUCGgCC- -5'
11132 5' -63.4 NC_002794.1 + 115835 0.66 0.696262
Target:  5'- cGGCGG-G-GCCCGGcGggcuCGGGCCuGGg -3'
miRNA:   3'- -CCGCCgCaCGGGCC-Cacu-GCUCGG-CC- -5'
11132 5' -63.4 NC_002794.1 + 70668 0.66 0.696262
Target:  5'- cGCGGCGgccGCCgCGgcGGUGACGuccugucgccGCUGGg -3'
miRNA:   3'- cCGCCGCa--CGG-GC--CCACUGCu---------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 880 0.66 0.695334
Target:  5'- cGGuCGGCGUGCgcgcgggCCGGGUGcCaacGCCGc -3'
miRNA:   3'- -CC-GCCGCACG-------GGCCCACuGcu-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 90572 0.66 0.693479
Target:  5'- cGGCGGCGgGuCCCGGGcgcuccagucccguCGGGCCu- -3'
miRNA:   3'- -CCGCCGCaC-GGGCCCacu-----------GCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 183125 0.66 0.691621
Target:  5'- cGGCGGCGgcucccguacgcgcaGCuccgcggacacgcggCCGGGcUGccCGAGCCGGu -3'
miRNA:   3'- -CCGCCGCa--------------CG---------------GGCCC-ACu-GCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 91739 0.66 0.691621
Target:  5'- cGGCGGCcaacaagGUGCCggCGGGcggcaccgcgcagGACGGGCUGc -3'
miRNA:   3'- -CCGCCG-------CACGG--GCCCa------------CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 66859 0.66 0.686971
Target:  5'- cGCGGCGagGCCgCGGcGUGcgGCuGAGCCa- -3'
miRNA:   3'- cCGCCGCa-CGG-GCC-CAC--UG-CUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 187474 0.66 0.686971
Target:  5'- -uCGGCGcGCgCCGGGccgagGACGAGgCCGc -3'
miRNA:   3'- ccGCCGCaCG-GGCCCa----CUGCUC-GGCc -5'
11132 5' -63.4 NC_002794.1 + 44177 0.66 0.686971
Target:  5'- aGCGGCG-GCUCGucgacuccgGGCGAaGCCGGg -3'
miRNA:   3'- cCGCCGCaCGGGCcca------CUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 151584 0.66 0.681378
Target:  5'- cGGCGGCgcgcgccgccgccgcGgGCCCGcGGUuccucggcuGACG-GCCGGc -3'
miRNA:   3'- -CCGCCG---------------CaCGGGC-CCA---------CUGCuCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.