miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 105546 0.66 0.705506
Target:  5'- cGGCGGCG-GCUCGGGcgaacgGAUagggugcgcguaGAGCaGGa -3'
miRNA:   3'- -CCGCCGCaCGGGCCCa-----CUG------------CUCGgCC- -5'
11132 5' -63.4 NC_002794.1 + 142985 0.66 0.705506
Target:  5'- gGGCuGCGUGCCCGccGUGGCcAGgaacCCGGu -3'
miRNA:   3'- -CCGcCGCACGGGCc-CACUGcUC----GGCC- -5'
11132 5' -63.4 NC_002794.1 + 89341 0.66 0.705506
Target:  5'- cGGCGGCGagaccuccgagGaCUCGGuGUGcgaaaGCGAGCCGu -3'
miRNA:   3'- -CCGCCGCa----------C-GGGCC-CAC-----UGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 190008 0.66 0.705506
Target:  5'- -uCGGCccGUCCGGGUccaucGGCG-GCCGGu -3'
miRNA:   3'- ccGCCGcaCGGGCCCA-----CUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 880 0.66 0.695334
Target:  5'- cGGuCGGCGUGCgcgcgggCCGGGUGcCaacGCCGc -3'
miRNA:   3'- -CC-GCCGCACG-------GGCCCACuGcu-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 70668 0.66 0.696262
Target:  5'- cGCGGCGgccGCCgCGgcGGUGACGuccugucgccGCUGGg -3'
miRNA:   3'- cCGCCGCa--CGG-GC--CCACUGCu---------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 115835 0.66 0.696262
Target:  5'- cGGCGG-G-GCCCGGcGggcuCGGGCCuGGg -3'
miRNA:   3'- -CCGCCgCaCGGGCC-Cacu-GCUCGG-CC- -5'
11132 5' -63.4 NC_002794.1 + 1363 0.66 0.705506
Target:  5'- gGGgGGCGUGUuccggacaccauCCGGGgGACaauGAGgCGGu -3'
miRNA:   3'- -CCgCCGCACG------------GGCCCaCUG---CUCgGCC- -5'
11132 5' -63.4 NC_002794.1 + 94481 0.67 0.649492
Target:  5'- cGGCGGCGgacgcgGCCgCGGGccgUGGCGGGg--- -3'
miRNA:   3'- -CCGCCGCa-----CGG-GCCC---ACUGCUCggcc -5'
11132 5' -63.4 NC_002794.1 + 53770 0.67 0.649492
Target:  5'- cGGCGGCGggacGCCCGc--GACGcGcCCGGc -3'
miRNA:   3'- -CCGCCGCa---CGGGCccaCUGCuC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 47323 0.67 0.649492
Target:  5'- gGGUGGgGUGCCCGGcucccgcGGCGgcGGCCu- -3'
miRNA:   3'- -CCGCCgCACGGGCCca-----CUGC--UCGGcc -5'
11132 5' -63.4 NC_002794.1 + 87004 0.67 0.643844
Target:  5'- cGGCGGCGUggguuccgGCgaggguccgcaggauCCGGG-GACcggcgcggcucgGGGCCGGg -3'
miRNA:   3'- -CCGCCGCA--------CG---------------GGCCCaCUG------------CUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 191685 0.67 0.640077
Target:  5'- cGGCGGCGUGCCCucGUcGCGGaCCa- -3'
miRNA:   3'- -CCGCCGCACGGGccCAcUGCUcGGcc -5'
11132 5' -63.4 NC_002794.1 + 100798 0.67 0.653255
Target:  5'- cGCGGCcgcuucugcgccuacGUG-CCGGGcGGCGggGGCCGGc -3'
miRNA:   3'- cCGCCG---------------CACgGGCCCaCUGC--UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 87100 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 87184 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 87142 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 87226 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 117200 0.67 0.658896
Target:  5'- -uCGGCGUcggGCCCGGGcGGCuccGGCCGc -3'
miRNA:   3'- ccGCCGCA---CGGGCCCaCUGc--UCGGCc -5'
11132 5' -63.4 NC_002794.1 + 147011 0.67 0.640077
Target:  5'- cGGCGGCGgccgccggcGCUCGGucuaagGACGAaGCCGu -3'
miRNA:   3'- -CCGCCGCa--------CGGGCCca----CUGCU-CGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.