miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 180702 0.68 0.564139
Target:  5'- cGGCgGGCGgaccaugGCUCGGGUucagagacgcgcgGACGAcGCCGu -3'
miRNA:   3'- -CCG-CCGCa------CGGGCCCA-------------CUGCU-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 120997 0.68 0.555813
Target:  5'- cGGCGGCGggccaugGCCgaGGGUcGGCcucccaagaGGCCGGa -3'
miRNA:   3'- -CCGCCGCa------CGGg-CCCA-CUGc--------UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 146852 0.68 0.564139
Target:  5'- cGGUGcGCGUcguucgcGUUCGGGUGGgGGGCgCGGu -3'
miRNA:   3'- -CCGC-CGCA-------CGGGCCCACUgCUCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 115932 0.68 0.583686
Target:  5'- cGGCGGCGggccgGCCCGccgcGUGuc--GCCGGg -3'
miRNA:   3'- -CCGCCGCa----CGGGCc---CACugcuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 105910 0.68 0.593043
Target:  5'- cGGCGGCG-GCgcuaccgccgCCGccgGACGGGCUGGa -3'
miRNA:   3'- -CCGCCGCaCG----------GGCccaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 110430 0.68 0.583686
Target:  5'- gGGCGGCugucgucgucgGUGgCgGaGGccGGCGAGCCGGc -3'
miRNA:   3'- -CCGCCG-----------CACgGgC-CCa-CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 44556 0.68 0.574359
Target:  5'- cGGCGGCGgcGCCCGuugacgucacgcGG-GAcCGAGCCa- -3'
miRNA:   3'- -CCGCCGCa-CGGGC------------CCaCU-GCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 37736 0.68 0.583686
Target:  5'- cGGCGGCGccGCCgGcGGcggcgcGGCGGcGCCGGc -3'
miRNA:   3'- -CCGCCGCa-CGGgC-CCa-----CUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 98079 0.68 0.583686
Target:  5'- uGGCGGCGcUGUCCGcuuUGGCGGGuauccCCGGu -3'
miRNA:   3'- -CCGCCGC-ACGGGCcc-ACUGCUC-----GGCC- -5'
11132 5' -63.4 NC_002794.1 + 186283 0.68 0.565066
Target:  5'- cGCGGCG-GCaCCGcGGccaGGCG-GCCGGu -3'
miRNA:   3'- cCGCCGCaCG-GGC-CCa--CUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 101657 0.69 0.519293
Target:  5'- gGGCGGCGguuaGCCCGuccgaaacgccGGcgGAgcgcgagccCGAGCCGGc -3'
miRNA:   3'- -CCGCCGCa---CGGGC-----------CCa-CU---------GCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 106978 0.69 0.519293
Target:  5'- cGCGGCGgccgGCaCgGcGGUGGCGGcGCUGGc -3'
miRNA:   3'- cCGCCGCa---CG-GgC-CCACUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 118932 0.69 0.519293
Target:  5'- aGGCGGUacacgaGCCCGGGgugcagGAaGAGCCGc -3'
miRNA:   3'- -CCGCCGca----CGGGCCCa-----CUgCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 44260 0.69 0.507624
Target:  5'- gGGCGGCucgGCcgCCGGG-GACGGaggaguccgcgcccGCCGGg -3'
miRNA:   3'- -CCGCCGca-CG--GGCCCaCUGCU--------------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 122975 0.69 0.528341
Target:  5'- gGGUGGCuGUacgcgcGCCUGGuGcgggccgugcUGACGGGCCGGc -3'
miRNA:   3'- -CCGCCG-CA------CGGGCC-C----------ACUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 23387 0.69 0.537446
Target:  5'- aGCGGCGgaugucgaagGCCCGGcUGACGuuCUGGu -3'
miRNA:   3'- cCGCCGCa---------CGGGCCcACUGCucGGCC- -5'
11132 5' -63.4 NC_002794.1 + 19535 0.69 0.528341
Target:  5'- cGCGGCGcgGCCCGccGGUGuCGGacCCGGa -3'
miRNA:   3'- cCGCCGCa-CGGGC--CCACuGCUc-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 65234 0.69 0.537446
Target:  5'- gGGCGGCGgucGCCgCGGc-GGCGAuCCGGc -3'
miRNA:   3'- -CCGCCGCa--CGG-GCCcaCUGCUcGGCC- -5'
11132 5' -63.4 NC_002794.1 + 95765 0.69 0.537446
Target:  5'- gGGCGGCG-GCCgCGac-GGCG-GCCGGg -3'
miRNA:   3'- -CCGCCGCaCGG-GCccaCUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 14535 0.69 0.510307
Target:  5'- cGGCcacGGCGcucucGCCCccgucgacgcgcGGGaGGCGAGCCGGc -3'
miRNA:   3'- -CCG---CCGCa----CGGG------------CCCaCUGCUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.