miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 122665 0.73 0.294289
Target:  5'- uGGCGGCGcagGCCCGGcuGUGcCGGucgcgccagcGCCGGg -3'
miRNA:   3'- -CCGCCGCa--CGGGCC--CACuGCU----------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 179695 0.73 0.313661
Target:  5'- uGGCGGCG-GCgacGGUGGCGAcGCCGGc -3'
miRNA:   3'- -CCGCCGCaCGggcCCACUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 154325 0.73 0.333983
Target:  5'- aGCGGCGUcggucGuCCCGGGUGcCGcGGCCGa -3'
miRNA:   3'- cCGCCGCA-----C-GGGCCCACuGC-UCGGCc -5'
11132 5' -63.4 NC_002794.1 + 123797 0.72 0.369954
Target:  5'- cGGUGGCGccGUUCGGGggcgcgGACGAGCaGGa -3'
miRNA:   3'- -CCGCCGCa-CGGGCCCa-----CUGCUCGgCC- -5'
11132 5' -63.4 NC_002794.1 + 50578 0.72 0.354529
Target:  5'- -aCGGCGUGCgcggcggCUGGGUGGCcGGcGCCGGg -3'
miRNA:   3'- ccGCCGCACG-------GGCCCACUG-CU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 145330 0.72 0.348058
Target:  5'- gGGCGGCGcucggGCCCGagcGGgccCGAGCUGGg -3'
miRNA:   3'- -CCGCCGCa----CGGGC---CCacuGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 37330 0.72 0.362552
Target:  5'- aGCGGUGggGCCCGGGcGGCagcaGGUCGGg -3'
miRNA:   3'- cCGCCGCa-CGGGCCCaCUGc---UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 180768 0.72 0.362552
Target:  5'- cGGCGGCaacUGUCCGGGcGGUG-GCCGGg -3'
miRNA:   3'- -CCGCCGc--ACGGGCCCaCUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 188251 0.72 0.355253
Target:  5'- cGGCGGCG-GCggCGGuagcGGCGGGCCGGg -3'
miRNA:   3'- -CCGCCGCaCGg-GCCca--CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 102155 0.72 0.340968
Target:  5'- cGGCGGCGUGCgcgCCGGGgccaucGugGcGCgCGGc -3'
miRNA:   3'- -CCGCCGCACG---GGCCCa-----CugCuCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 137347 0.71 0.400581
Target:  5'- cGGCucGGCGUcGUCgGGGUcuucuuCGAGCCGGg -3'
miRNA:   3'- -CCG--CCGCA-CGGgCCCAcu----GCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 118274 0.71 0.392774
Target:  5'- cGGCGGCGccgGCgUCGGG-GAcCGcGCCGGg -3'
miRNA:   3'- -CCGCCGCa--CG-GGCCCaCU-GCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 94050 0.71 0.385067
Target:  5'- cGGCGGCG-GUgCGGG-GGCG-GCgGGg -3'
miRNA:   3'- -CCGCCGCaCGgGCCCaCUGCuCGgCC- -5'
11132 5' -63.4 NC_002794.1 + 126625 0.71 0.416489
Target:  5'- cGCGGCGUGagcgcgaCCGGGcgcccgGACGcGCCGa -3'
miRNA:   3'- cCGCCGCACg------GGCCCa-----CUGCuCGGCc -5'
11132 5' -63.4 NC_002794.1 + 104467 0.71 0.424586
Target:  5'- gGGCGGCGUGUgCaGGaugcgGGCGgccacggcGGCCGGg -3'
miRNA:   3'- -CCGCCGCACGgGcCCa----CUGC--------UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 92266 0.71 0.416489
Target:  5'- uGGCGGCG-GCgCCGGGcgaGGCGcgcaaGGUCGGc -3'
miRNA:   3'- -CCGCCGCaCG-GGCCCa--CUGC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 112757 0.71 0.392774
Target:  5'- cGGCGGCGggGUCgGGGUGAgGucUCGGa -3'
miRNA:   3'- -CCGCCGCa-CGGgCCCACUgCucGGCC- -5'
11132 5' -63.4 NC_002794.1 + 64802 0.71 0.424586
Target:  5'- cGGCGaGCGacGCCgCGGacggcGGCGAGCCGGc -3'
miRNA:   3'- -CCGC-CGCa-CGG-GCCca---CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 615 0.7 0.483756
Target:  5'- cGGUcaGGCG-GCCCGGuGUGGCGuucGCCu- -3'
miRNA:   3'- -CCG--CCGCaCGGGCC-CACUGCu--CGGcc -5'
11132 5' -63.4 NC_002794.1 + 68924 0.7 0.465571
Target:  5'- cGCGGCGUccucgucGCCCGcGGgccGCGGcGCCGGc -3'
miRNA:   3'- cCGCCGCA-------CGGGC-CCac-UGCU-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.