Results 61 - 80 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11132 | 5' | -63.4 | NC_002794.1 | + | 118932 | 0.69 | 0.519293 |
Target: 5'- aGGCGGUacacgaGCCCGGGgugcagGAaGAGCCGc -3' miRNA: 3'- -CCGCCGca----CGGGCCCa-----CUgCUCGGCc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 44260 | 0.69 | 0.507624 |
Target: 5'- gGGCGGCucgGCcgCCGGG-GACGGaggaguccgcgcccGCCGGg -3' miRNA: 3'- -CCGCCGca-CG--GGCCCaCUGCU--------------CGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 137619 | 0.69 | 0.491654 |
Target: 5'- cGGCGGCgGUGCCCac--GACGAcguccuggcgggcGCCGGg -3' miRNA: 3'- -CCGCCG-CACGGGcccaCUGCU-------------CGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 125737 | 0.69 | 0.501386 |
Target: 5'- aGGCggaGGCGgGCCgCGGGacGGCG-GCCGGc -3' miRNA: 3'- -CCG---CCGCaCGG-GCCCa-CUGCuCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 71302 | 0.69 | 0.492535 |
Target: 5'- cGcCGGCGcGCUCGGGcGGCGAGCgCGc -3' miRNA: 3'- cC-GCCGCaCGGGCCCaCUGCUCG-GCc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 14535 | 0.69 | 0.510307 |
Target: 5'- cGGCcacGGCGcucucGCCCccgucgacgcgcGGGaGGCGAGCCGGc -3' miRNA: 3'- -CCG---CCGCa----CGGG------------CCCaCUGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 55190 | 0.69 | 0.500498 |
Target: 5'- aGGCGGCG-GCCCuaacaccGGcGcGGCGgaGGCCGGc -3' miRNA: 3'- -CCGCCGCaCGGG-------CC-CaCUGC--UCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 101570 | 0.69 | 0.492535 |
Target: 5'- cGGCGGgaGUGCcggccgccgcggCCGGGggGGCGGguGCCGGc -3' miRNA: 3'- -CCGCCg-CACG------------GGCCCa-CUGCU--CGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 101526 | 0.69 | 0.501386 |
Target: 5'- cGGCGGgGUGCCCGGcGccACGuuCCGa -3' miRNA: 3'- -CCGCCgCACGGGCC-CacUGCucGGCc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 180702 | 0.68 | 0.564139 |
Target: 5'- cGGCgGGCGgaccaugGCUCGGGUucagagacgcgcgGACGAcGCCGu -3' miRNA: 3'- -CCG-CCGCa------CGGGCCCA-------------CUGCU-CGGCc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 107883 | 0.68 | 0.546605 |
Target: 5'- aGGCGGCGcgGC--GGGUG-CGGcuGCCGGg -3' miRNA: 3'- -CCGCCGCa-CGggCCCACuGCU--CGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 115932 | 0.68 | 0.583686 |
Target: 5'- cGGCGGCGggccgGCCCGccgcGUGuc--GCCGGg -3' miRNA: 3'- -CCGCCGCa----CGGGCc---CACugcuCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 105910 | 0.68 | 0.593043 |
Target: 5'- cGGCGGCG-GCgcuaccgccgCCGccgGACGGGCUGGa -3' miRNA: 3'- -CCGCCGCaCG----------GGCccaCUGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 44556 | 0.68 | 0.574359 |
Target: 5'- cGGCGGCGgcGCCCGuugacgucacgcGG-GAcCGAGCCa- -3' miRNA: 3'- -CCGCCGCa-CGGGC------------CCaCU-GCUCGGcc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 37736 | 0.68 | 0.583686 |
Target: 5'- cGGCGGCGccGCCgGcGGcggcgcGGCGGcGCCGGc -3' miRNA: 3'- -CCGCCGCa-CGGgC-CCa-----CUGCU-CGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 138954 | 0.68 | 0.545687 |
Target: 5'- cGUGGCGUGCUgcgacgcggcggaCGGGUuggccuGGCGGGCCu- -3' miRNA: 3'- cCGCCGCACGG-------------GCCCA------CUGCUCGGcc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 98079 | 0.68 | 0.583686 |
Target: 5'- uGGCGGCGcUGUCCGcuuUGGCGGGuauccCCGGu -3' miRNA: 3'- -CCGCCGC-ACGGGCcc-ACUGCUC-----GGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 186283 | 0.68 | 0.565066 |
Target: 5'- cGCGGCG-GCaCCGcGGccaGGCG-GCCGGu -3' miRNA: 3'- cCGCCGCaCG-GGC-CCa--CUGCuCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 110430 | 0.68 | 0.583686 |
Target: 5'- gGGCGGCugucgucgucgGUGgCgGaGGccGGCGAGCCGGc -3' miRNA: 3'- -CCGCCG-----------CACgGgC-CCa-CUGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 120997 | 0.68 | 0.555813 |
Target: 5'- cGGCGGCGggccaugGCCgaGGGUcGGCcucccaagaGGCCGGa -3' miRNA: 3'- -CCGCCGCa------CGGg-CCCA-CUGc--------UCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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