miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 114721 0.83 0.070476
Target:  5'- cGGCGGCGgcgGCuCCGGGUucGuCGAGCCGGc -3'
miRNA:   3'- -CCGCCGCa--CG-GGCCCA--CuGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 92321 0.81 0.104251
Target:  5'- gGGCGGCGgggGCCCGGGcgGGCG-GCuCGGc -3'
miRNA:   3'- -CCGCCGCa--CGGGCCCa-CUGCuCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 94219 0.79 0.142374
Target:  5'- cGGUGGCG-GCgaCGGGcgGGCGGGCCGGu -3'
miRNA:   3'- -CCGCCGCaCGg-GCCCa-CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 95839 0.78 0.145784
Target:  5'- cGGCGGCGgcgGCCgGGGaggcggcgGGCGGGCCGu -3'
miRNA:   3'- -CCGCCGCa--CGGgCCCa-------CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 142893 0.78 0.149269
Target:  5'- cGGCaGGCGUGCCCGGcGUccuccGgGGGCCGGa -3'
miRNA:   3'- -CCG-CCGCACGGGCC-CAc----UgCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 118746 0.77 0.171807
Target:  5'- cGGCGcGCucagGCCCaGGUGACGAGCuCGGc -3'
miRNA:   3'- -CCGC-CGca--CGGGcCCACUGCUCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 32581 0.76 0.211303
Target:  5'- cGCGGCgGUGCCgGGGccggGGCcgGGGCCGGg -3'
miRNA:   3'- cCGCCG-CACGGgCCCa---CUG--CUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 105446 0.76 0.221081
Target:  5'- cGGCGGCGccgucguucUGCCCGuucuGGgacGACGAGCCGu -3'
miRNA:   3'- -CCGCCGC---------ACGGGC----CCa--CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 38436 0.76 0.221081
Target:  5'- uGGCGGCG-GgCCGGacUGAgGAGCCGGc -3'
miRNA:   3'- -CCGCCGCaCgGGCCc-ACUgCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 141429 0.75 0.247218
Target:  5'- gGGCGGCGgggGCgCCGGG-GGC--GCCGGg -3'
miRNA:   3'- -CCGCCGCa--CG-GGCCCaCUGcuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 178799 0.75 0.252743
Target:  5'- aGGCGGCucgGCCCGGGggGAcCGGGCacuCGGg -3'
miRNA:   3'- -CCGCCGca-CGGGCCCa-CU-GCUCG---GCC- -5'
11132 5' -63.4 NC_002794.1 + 149486 0.74 0.257802
Target:  5'- gGGCGGCaUGCUCGGGgauggggauggUGACGGggucgucGCCGGg -3'
miRNA:   3'- -CCGCCGcACGGGCCC-----------ACUGCU-------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 18704 0.74 0.257802
Target:  5'- cGGCGGCGgcgGUCCGGacGUcggagccGACGAGCCGc -3'
miRNA:   3'- -CCGCCGCa--CGGGCC--CA-------CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 148644 0.74 0.264097
Target:  5'- cGGCGGCGUGCUCGGcu-ACGcGCCGa -3'
miRNA:   3'- -CCGCCGCACGGGCCcacUGCuCGGCc -5'
11132 5' -63.4 NC_002794.1 + 143329 0.74 0.288042
Target:  5'- cGGUcGCGUGCUCGGGcaGCGGGCuCGGg -3'
miRNA:   3'- -CCGcCGCACGGGCCCacUGCUCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 120123 0.74 0.288042
Target:  5'- cGCGcGCGacgGCgaCCGGG-GACGGGCCGGu -3'
miRNA:   3'- cCGC-CGCa--CG--GGCCCaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 122665 0.73 0.294289
Target:  5'- uGGCGGCGcagGCCCGGcuGUGcCGGucgcgccagcGCCGGg -3'
miRNA:   3'- -CCGCCGCa--CGGGCC--CACuGCU----------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 108454 0.73 0.300641
Target:  5'- cGGCGGCG-GCCCGccgGcACGGGCCGa -3'
miRNA:   3'- -CCGCCGCaCGGGCccaC-UGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 94011 0.73 0.313661
Target:  5'- cGGCGGCGgGCCggCGGGUuccgccGGCGGGCCc- -3'
miRNA:   3'- -CCGCCGCaCGG--GCCCA------CUGCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 142590 0.73 0.313661
Target:  5'- --gGGCGcGCCCuGGGggaUGACGAGCUGGc -3'
miRNA:   3'- ccgCCGCaCGGG-CCC---ACUGCUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.