miRNA display CGI


Results 41 - 60 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 111093 0.7 0.465571
Target:  5'- gGGuCGGCGgGCCCGGcgggaccguggccGUcGACGGcGCCGGc -3'
miRNA:   3'- -CC-GCCGCaCGGGCC-------------CA-CUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 68924 0.7 0.465571
Target:  5'- cGCGGCGUccucgucGCCCGcGGgccGCGGcGCCGGc -3'
miRNA:   3'- cCGCCGCA-------CGGGC-CCac-UGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 126399 0.7 0.465571
Target:  5'- cGGCGGCGUGCgCGGcGgucGCGAucuggcuGCUGGu -3'
miRNA:   3'- -CCGCCGCACGgGCC-Cac-UGCU-------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 141946 0.7 0.466429
Target:  5'- cGGCGGCGa-CCCGuugGACG-GCCGGg -3'
miRNA:   3'- -CCGCCGCacGGGCccaCUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 102074 0.7 0.466429
Target:  5'- gGGCGaCcUGCCgCGGGccGACGAGCCGc -3'
miRNA:   3'- -CCGCcGcACGG-GCCCa-CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 146356 0.7 0.475053
Target:  5'- cGCGGCGgccGCCCGGGU----AGCCGu -3'
miRNA:   3'- cCGCCGCa--CGGGCCCAcugcUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 95799 0.7 0.475053
Target:  5'- cGCGGCGgaggaaCCGGGggagcGGCGgcGGCCGGg -3'
miRNA:   3'- cCGCCGCacg---GGCCCa----CUGC--UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 138709 0.7 0.483756
Target:  5'- gGGCGGCGUGgaCUCGcGU--CGAGCCGGc -3'
miRNA:   3'- -CCGCCGCAC--GGGCcCAcuGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 122575 0.7 0.483756
Target:  5'- aGCGGC-UGCUgGGGaugaugaagGACGGGCUGGc -3'
miRNA:   3'- cCGCCGcACGGgCCCa--------CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 615 0.7 0.483756
Target:  5'- cGGUcaGGCG-GCCCGGuGUGGCGuucGCCu- -3'
miRNA:   3'- -CCG--CCGCaCGGGCC-CACUGCu--CGGcc -5'
11132 5' -63.4 NC_002794.1 + 137619 0.69 0.491654
Target:  5'- cGGCGGCgGUGCCCac--GACGAcguccuggcgggcGCCGGg -3'
miRNA:   3'- -CCGCCG-CACGGGcccaCUGCU-------------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 71302 0.69 0.492535
Target:  5'- cGcCGGCGcGCUCGGGcGGCGAGCgCGc -3'
miRNA:   3'- cC-GCCGCaCGGGCCCaCUGCUCG-GCc -5'
11132 5' -63.4 NC_002794.1 + 101570 0.69 0.492535
Target:  5'- cGGCGGgaGUGCcggccgccgcggCCGGGggGGCGGguGCCGGc -3'
miRNA:   3'- -CCGCCg-CACG------------GGCCCa-CUGCU--CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 55190 0.69 0.500498
Target:  5'- aGGCGGCG-GCCCuaacaccGGcGcGGCGgaGGCCGGc -3'
miRNA:   3'- -CCGCCGCaCGGG-------CC-CaCUGC--UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 145498 0.69 0.501386
Target:  5'- aGGaugaGGCGUGCgaagGGGUGcGCGAGgCCGGc -3'
miRNA:   3'- -CCg---CCGCACGgg--CCCAC-UGCUC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 50791 0.69 0.501386
Target:  5'- gGGCGGCGccuccucGCCCGGcGUcgGGCGcuCCGGc -3'
miRNA:   3'- -CCGCCGCa------CGGGCC-CA--CUGCucGGCC- -5'
11132 5' -63.4 NC_002794.1 + 125737 0.69 0.501386
Target:  5'- aGGCggaGGCGgGCCgCGGGacGGCG-GCCGGc -3'
miRNA:   3'- -CCG---CCGCaCGG-GCCCa-CUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 101526 0.69 0.501386
Target:  5'- cGGCGGgGUGCCCGGcGccACGuuCCGa -3'
miRNA:   3'- -CCGCCgCACGGGCC-CacUGCucGGCc -5'
11132 5' -63.4 NC_002794.1 + 44260 0.69 0.507624
Target:  5'- gGGCGGCucgGCcgCCGGG-GACGGaggaguccgcgcccGCCGGg -3'
miRNA:   3'- -CCGCCGca-CG--GGCCCaCUGCU--------------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 14535 0.69 0.510307
Target:  5'- cGGCcacGGCGcucucGCCCccgucgacgcgcGGGaGGCGAGCCGGc -3'
miRNA:   3'- -CCG---CCGCa----CGGG------------CCCaCUGCUCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.