miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 101657 0.69 0.519293
Target:  5'- gGGCGGCGguuaGCCCGuccgaaacgccGGcgGAgcgcgagccCGAGCCGGc -3'
miRNA:   3'- -CCGCCGCa---CGGGC-----------CCa-CU---------GCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 106978 0.69 0.519293
Target:  5'- cGCGGCGgccgGCaCgGcGGUGGCGGcGCUGGc -3'
miRNA:   3'- cCGCCGCa---CG-GgC-CCACUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 118932 0.69 0.519293
Target:  5'- aGGCGGUacacgaGCCCGGGgugcagGAaGAGCCGc -3'
miRNA:   3'- -CCGCCGca----CGGGCCCa-----CUgCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 19535 0.69 0.528341
Target:  5'- cGCGGCGcgGCCCGccGGUGuCGGacCCGGa -3'
miRNA:   3'- cCGCCGCa-CGGGC--CCACuGCUc-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 122975 0.69 0.528341
Target:  5'- gGGUGGCuGUacgcgcGCCUGGuGcgggccgugcUGACGGGCCGGc -3'
miRNA:   3'- -CCGCCG-CA------CGGGCC-C----------ACUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 65234 0.69 0.537446
Target:  5'- gGGCGGCGgucGCCgCGGc-GGCGAuCCGGc -3'
miRNA:   3'- -CCGCCGCa--CGG-GCCcaCUGCUcGGCC- -5'
11132 5' -63.4 NC_002794.1 + 95765 0.69 0.537446
Target:  5'- gGGCGGCG-GCCgCGac-GGCG-GCCGGg -3'
miRNA:   3'- -CCGCCGCaCGG-GCccaCUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 94279 0.69 0.537446
Target:  5'- cGCGGCGcgGCCCgagcGGGgGGCG-GCuCGGg -3'
miRNA:   3'- cCGCCGCa-CGGG----CCCaCUGCuCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 23387 0.69 0.537446
Target:  5'- aGCGGCGgaugucgaagGCCCGGcUGACGuuCUGGu -3'
miRNA:   3'- cCGCCGCa---------CGGGCCcACUGCucGGCC- -5'
11132 5' -63.4 NC_002794.1 + 138954 0.68 0.545687
Target:  5'- cGUGGCGUGCUgcgacgcggcggaCGGGUuggccuGGCGGGCCu- -3'
miRNA:   3'- cCGCCGCACGG-------------GCCCA------CUGCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 141644 0.68 0.546605
Target:  5'- aGGcCGGCGUGgCCGcGGccgccGGCGGGUCGa -3'
miRNA:   3'- -CC-GCCGCACgGGC-CCa----CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 107883 0.68 0.546605
Target:  5'- aGGCGGCGcgGC--GGGUG-CGGcuGCCGGg -3'
miRNA:   3'- -CCGCCGCa-CGggCCCACuGCU--CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 72451 0.68 0.546605
Target:  5'- cGGCGGCGccccgcGCCCGGccccgcGGCGGcGCCGa -3'
miRNA:   3'- -CCGCCGCa-----CGGGCCca----CUGCU-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 156418 0.68 0.546605
Target:  5'- cGCGGCcacgGCCggCGGGUGA-GAGaCCGGu -3'
miRNA:   3'- cCGCCGca--CGG--GCCCACUgCUC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 102649 0.68 0.547524
Target:  5'- uGGCGGCGcGCUCGGaGgagcugccgagcgugGGCGA-CCGGg -3'
miRNA:   3'- -CCGCCGCaCGGGCC-Ca--------------CUGCUcGGCC- -5'
11132 5' -63.4 NC_002794.1 + 14596 0.68 0.555813
Target:  5'- cGUGGCGagcGCgCCGGGcaccgcGACGGGgCCGGa -3'
miRNA:   3'- cCGCCGCa--CG-GGCCCa-----CUGCUC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 120997 0.68 0.555813
Target:  5'- cGGCGGCGggccaugGCCgaGGGUcGGCcucccaagaGGCCGGa -3'
miRNA:   3'- -CCGCCGCa------CGGg-CCCA-CUGc--------UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 180702 0.68 0.564139
Target:  5'- cGGCgGGCGgaccaugGCUCGGGUucagagacgcgcgGACGAcGCCGu -3'
miRNA:   3'- -CCG-CCGCa------CGGGCCCA-------------CUGCU-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 146852 0.68 0.564139
Target:  5'- cGGUGcGCGUcguucgcGUUCGGGUGGgGGGCgCGGu -3'
miRNA:   3'- -CCGC-CGCA-------CGGGCCCACUgCUCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 186283 0.68 0.565066
Target:  5'- cGCGGCG-GCaCCGcGGccaGGCG-GCCGGu -3'
miRNA:   3'- cCGCCGCaCG-GGC-CCa--CUGCuCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.