miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 147011 0.67 0.640077
Target:  5'- cGGCGGCGgccgccggcGCUCGGucuaagGACGAaGCCGu -3'
miRNA:   3'- -CCGCCGCa--------CGGGCCca----CUGCU-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 86522 0.67 0.640077
Target:  5'- gGGCcGCGcccgaccggaUGcCCCGGGc--CGAGCCGGg -3'
miRNA:   3'- -CCGcCGC----------AC-GGGCCCacuGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 12237 0.67 0.640077
Target:  5'- cGGCGGCGccGUCCGcGGcGcCGAuCCGGa -3'
miRNA:   3'- -CCGCCGCa-CGGGC-CCaCuGCUcGGCC- -5'
11132 5' -63.4 NC_002794.1 + 128161 0.67 0.640077
Target:  5'- cGGCGGCucGCgCCGcG-GACGGGUCGGu -3'
miRNA:   3'- -CCGCCGcaCG-GGCcCaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 86354 0.67 0.640077
Target:  5'- gGGCcGCGcccgaccggaUGcCCCGGGc--CGAGCCGGg -3'
miRNA:   3'- -CCGcCGC----------AC-GGGCCCacuGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 70294 0.67 0.630656
Target:  5'- aGGcCGGgGggGCCCGGGcgcGAaGAGCCGc -3'
miRNA:   3'- -CC-GCCgCa-CGGGCCCa--CUgCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 75479 0.67 0.630656
Target:  5'- cGGCGcCGagacgGCCCGcGU-ACGAGCCGGc -3'
miRNA:   3'- -CCGCcGCa----CGGGCcCAcUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 112296 0.67 0.625004
Target:  5'- gGGCGGCcc-CCCGGGUccgacuucggcgccGACGgcggggagcgcgccGGCCGGc -3'
miRNA:   3'- -CCGCCGcacGGGCCCA--------------CUGC--------------UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 13351 0.67 0.622178
Target:  5'- uGGCGGCGccccucGCCCGGGcccuccucccccuCGAGCCc- -3'
miRNA:   3'- -CCGCCGCa-----CGGGCCCacu----------GCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 68330 0.67 0.620295
Target:  5'- cGCGGCcugGUGaCCGGGUucauccgccaagaGACGGGCCu- -3'
miRNA:   3'- cCGCCG---CACgGGCCCA-------------CUGCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 83874 0.67 0.611824
Target:  5'- cGGuCGGCGcgacgGcCCCGGGcucggcgcccGACGAGcCCGGc -3'
miRNA:   3'- -CC-GCCGCa----C-GGGCCCa---------CUGCUC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 37965 0.67 0.611824
Target:  5'- -uCGGCG-GCUCGuGGU-ACGAGCCGa -3'
miRNA:   3'- ccGCCGCaCGGGC-CCAcUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 8122 0.67 0.611824
Target:  5'- gGGCGGCG-GCCUccucGGUGACcGGCgaCGGc -3'
miRNA:   3'- -CCGCCGCaCGGGc---CCACUGcUCG--GCC- -5'
11132 5' -63.4 NC_002794.1 + 105910 0.68 0.593043
Target:  5'- cGGCGGCG-GCgcuaccgccgCCGccgGACGGGCUGGa -3'
miRNA:   3'- -CCGCCGCaCG----------GGCccaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 115932 0.68 0.583686
Target:  5'- cGGCGGCGggccgGCCCGccgcGUGuc--GCCGGg -3'
miRNA:   3'- -CCGCCGCa----CGGGCc---CACugcuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 110430 0.68 0.583686
Target:  5'- gGGCGGCugucgucgucgGUGgCgGaGGccGGCGAGCCGGc -3'
miRNA:   3'- -CCGCCG-----------CACgGgC-CCa-CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 37736 0.68 0.583686
Target:  5'- cGGCGGCGccGCCgGcGGcggcgcGGCGGcGCCGGc -3'
miRNA:   3'- -CCGCCGCa-CGGgC-CCa-----CUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 98079 0.68 0.583686
Target:  5'- uGGCGGCGcUGUCCGcuuUGGCGGGuauccCCGGu -3'
miRNA:   3'- -CCGCCGC-ACGGGCcc-ACUGCUC-----GGCC- -5'
11132 5' -63.4 NC_002794.1 + 44556 0.68 0.574359
Target:  5'- cGGCGGCGgcGCCCGuugacgucacgcGG-GAcCGAGCCa- -3'
miRNA:   3'- -CCGCCGCa-CGGGC------------CCaCU-GCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 186283 0.68 0.565066
Target:  5'- cGCGGCG-GCaCCGcGGccaGGCG-GCCGGu -3'
miRNA:   3'- cCGCCGCaCG-GGC-CCa--CUGCuCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.