miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 615 0.7 0.483756
Target:  5'- cGGUcaGGCG-GCCCGGuGUGGCGuucGCCu- -3'
miRNA:   3'- -CCG--CCGCaCGGGCC-CACUGCu--CGGcc -5'
11132 5' -63.4 NC_002794.1 + 880 0.66 0.695334
Target:  5'- cGGuCGGCGUGCgcgcgggCCGGGUGcCaacGCCGc -3'
miRNA:   3'- -CC-GCCGCACG-------GGCCCACuGcu-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 1363 0.66 0.705506
Target:  5'- gGGgGGCGUGUuccggacaccauCCGGGgGACaauGAGgCGGu -3'
miRNA:   3'- -CCgCCGCACG------------GGCCCaCUG---CUCgGCC- -5'
11132 5' -63.4 NC_002794.1 + 8122 0.67 0.611824
Target:  5'- gGGCGGCG-GCCUccucGGUGACcGGCgaCGGc -3'
miRNA:   3'- -CCGCCGCaCGGGc---CCACUGcUCG--GCC- -5'
11132 5' -63.4 NC_002794.1 + 12237 0.67 0.640077
Target:  5'- cGGCGGCGccGUCCGcGGcGcCGAuCCGGa -3'
miRNA:   3'- -CCGCCGCa-CGGGC-CCaCuGCUcGGCC- -5'
11132 5' -63.4 NC_002794.1 + 13351 0.67 0.622178
Target:  5'- uGGCGGCGccccucGCCCGGGcccuccucccccuCGAGCCc- -3'
miRNA:   3'- -CCGCCGCa-----CGGGCCCacu----------GCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 14535 0.69 0.510307
Target:  5'- cGGCcacGGCGcucucGCCCccgucgacgcgcGGGaGGCGAGCCGGc -3'
miRNA:   3'- -CCG---CCGCa----CGGG------------CCCaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 14596 0.68 0.555813
Target:  5'- cGUGGCGagcGCgCCGGGcaccgcGACGGGgCCGGa -3'
miRNA:   3'- cCGCCGCa--CG-GGCCCa-----CUGCUC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 18704 0.74 0.257802
Target:  5'- cGGCGGCGgcgGUCCGGacGUcggagccGACGAGCCGc -3'
miRNA:   3'- -CCGCCGCa--CGGGCC--CA-------CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 19535 0.69 0.528341
Target:  5'- cGCGGCGcgGCCCGccGGUGuCGGacCCGGa -3'
miRNA:   3'- cCGCCGCa-CGGGC--CCACuGCUc-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 23387 0.69 0.537446
Target:  5'- aGCGGCGgaugucgaagGCCCGGcUGACGuuCUGGu -3'
miRNA:   3'- cCGCCGCa---------CGGGCCcACUGCucGGCC- -5'
11132 5' -63.4 NC_002794.1 + 32581 0.76 0.211303
Target:  5'- cGCGGCgGUGCCgGGGccggGGCcgGGGCCGGg -3'
miRNA:   3'- cCGCCG-CACGGgCCCa---CUG--CUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 37330 0.72 0.362552
Target:  5'- aGCGGUGggGCCCGGGcGGCagcaGGUCGGg -3'
miRNA:   3'- cCGCCGCa-CGGGCCCaCUGc---UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 37736 0.68 0.583686
Target:  5'- cGGCGGCGccGCCgGcGGcggcgcGGCGGcGCCGGc -3'
miRNA:   3'- -CCGCCGCa-CGGgC-CCa-----CUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 37870 0.66 0.714699
Target:  5'- cGGuCGGCGU-CUCGGGcGGCgGGGgCGGu -3'
miRNA:   3'- -CC-GCCGCAcGGGCCCaCUG-CUCgGCC- -5'
11132 5' -63.4 NC_002794.1 + 37965 0.67 0.611824
Target:  5'- -uCGGCG-GCUCGuGGU-ACGAGCCGa -3'
miRNA:   3'- ccGCCGCaCGGGC-CCAcUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 38436 0.76 0.221081
Target:  5'- uGGCGGCG-GgCCGGacUGAgGAGCCGGc -3'
miRNA:   3'- -CCGCCGCaCgGGCCc-ACUgCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 44177 0.66 0.686971
Target:  5'- aGCGGCG-GCUCGucgacuccgGGCGAaGCCGGg -3'
miRNA:   3'- cCGCCGCaCGGGCcca------CUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 44260 0.69 0.507624
Target:  5'- gGGCGGCucgGCcgCCGGG-GACGGaggaguccgcgcccGCCGGg -3'
miRNA:   3'- -CCGCCGca-CG--GGCCCaCUGCU--------------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 44556 0.68 0.574359
Target:  5'- cGGCGGCGgcGCCCGuugacgucacgcGG-GAcCGAGCCa- -3'
miRNA:   3'- -CCGCCGCa-CGGGC------------CCaCU-GCUCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.