miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 47323 0.67 0.649492
Target:  5'- gGGUGGgGUGCCCGGcucccgcGGCGgcGGCCu- -3'
miRNA:   3'- -CCGCCgCACGGGCCca-----CUGC--UCGGcc -5'
11132 5' -63.4 NC_002794.1 + 50578 0.72 0.354529
Target:  5'- -aCGGCGUGCgcggcggCUGGGUGGCcGGcGCCGGg -3'
miRNA:   3'- ccGCCGCACG-------GGCCCACUG-CU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 50791 0.69 0.501386
Target:  5'- gGGCGGCGccuccucGCCCGGcGUcgGGCGcuCCGGc -3'
miRNA:   3'- -CCGCCGCa------CGGGCC-CA--CUGCucGGCC- -5'
11132 5' -63.4 NC_002794.1 + 53770 0.67 0.649492
Target:  5'- cGGCGGCGggacGCCCGc--GACGcGcCCGGc -3'
miRNA:   3'- -CCGCCGCa---CGGGCccaCUGCuC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 55190 0.69 0.500498
Target:  5'- aGGCGGCG-GCCCuaacaccGGcGcGGCGgaGGCCGGc -3'
miRNA:   3'- -CCGCCGCaCGGG-------CC-CaCUGC--UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 62068 0.7 0.446909
Target:  5'- cGGCGGCGacGCCgGcGGcGACGAcggcgacgcggcgcGCCGGa -3'
miRNA:   3'- -CCGCCGCa-CGGgC-CCaCUGCU--------------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 64115 0.66 0.714699
Target:  5'- cGGCGcGUcUGCaCGcGGUcGACGGGCUGGu -3'
miRNA:   3'- -CCGC-CGcACGgGC-CCA-CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 64802 0.71 0.424586
Target:  5'- cGGCGaGCGacGCCgCGGacggcGGCGAGCCGGc -3'
miRNA:   3'- -CCGC-CGCa-CGG-GCCca---CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 65234 0.69 0.537446
Target:  5'- gGGCGGCGgucGCCgCGGc-GGCGAuCCGGc -3'
miRNA:   3'- -CCGCCGCa--CGG-GCCcaCUGCUcGGCC- -5'
11132 5' -63.4 NC_002794.1 + 66859 0.66 0.686971
Target:  5'- cGCGGCGagGCCgCGGcGUGcgGCuGAGCCa- -3'
miRNA:   3'- cCGCCGCa-CGG-GCC-CAC--UG-CUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 67959 0.66 0.668281
Target:  5'- aGGaCGGCGgGCCCa---GACGGGUCGGu -3'
miRNA:   3'- -CC-GCCGCaCGGGcccaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 68330 0.67 0.620295
Target:  5'- cGCGGCcugGUGaCCGGGUucauccgccaagaGACGGGCCu- -3'
miRNA:   3'- cCGCCG---CACgGGCCCA-------------CUGCUCGGcc -5'
11132 5' -63.4 NC_002794.1 + 68924 0.7 0.465571
Target:  5'- cGCGGCGUccucgucGCCCGcGGgccGCGGcGCCGGc -3'
miRNA:   3'- cCGCCGCA-------CGGGC-CCac-UGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 70294 0.67 0.630656
Target:  5'- aGGcCGGgGggGCCCGGGcgcGAaGAGCCGc -3'
miRNA:   3'- -CC-GCCgCa-CGGGCCCa--CUgCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 70668 0.66 0.696262
Target:  5'- cGCGGCGgccGCCgCGgcGGUGACGuccugucgccGCUGGg -3'
miRNA:   3'- cCGCCGCa--CGG-GC--CCACUGCu---------CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 71302 0.69 0.492535
Target:  5'- cGcCGGCGcGCUCGGGcGGCGAGCgCGc -3'
miRNA:   3'- cC-GCCGCaCGGGCCCaCUGCUCG-GCc -5'
11132 5' -63.4 NC_002794.1 + 72451 0.68 0.546605
Target:  5'- cGGCGGCGccccgcGCCCGGccccgcGGCGGcGCCGa -3'
miRNA:   3'- -CCGCCGCa-----CGGGCCca----CUGCU-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 75479 0.67 0.630656
Target:  5'- cGGCGcCGagacgGCCCGcGU-ACGAGCCGGc -3'
miRNA:   3'- -CCGCcGCa----CGGGCcCAcUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 79444 0.66 0.677642
Target:  5'- cGGCGGCGaccgGCgCGGagacGACGAcGCCGc -3'
miRNA:   3'- -CCGCCGCa---CGgGCCca--CUGCU-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 80407 0.66 0.677642
Target:  5'- cGCcGCG-GCCCaGGUGGCGccgGGCgGGg -3'
miRNA:   3'- cCGcCGCaCGGGcCCACUGC---UCGgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.